PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT03738

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Dof

Protein Properties

Length: 497aa MW: 53554.3 Da PI: 7.5159

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT03738	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	3e-38	120	180	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rn+PvG+grrk+k+ss EMT03738 120 PDKILPCPRCNSMDTKFCYYNNYNIHQPRHFCRGCQRYWTAGGSMRNLPVGAGRRKSKSSS 180 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	117	177	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-31	122	178	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	124	178	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	126	162	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MSYIMLCLIL VRLFKLAASY KIEHRYRDDV CQLIIARLAY HTVHGQDSCK DTGDTRITEE 60 NSCTPPDLNL SQPNNSGLNS SSACENQTSN GDEMTEPEST LEAAKTEGDG SNKEKVLKKP 120 DKILPCPRCN SMDTKFCYYN NYNIHQPRHF CRGCQRYWTA GGSMRNLPVG AGRRKSKSSS 180 TNCNGILIPG GSLAAPGGDS SVIPLPIKEN QPAVKFGSDS TLPNSMASLL RVEEQNKNSN 240 PASTAHPRNG ENQTCPPSAT TSDNPRIESV KAAVGVHQNG ITGDCNGVTP MPPIPCFPGP 300 PFMYPWNPAW NGVPAMAAPV CPVPAEPANC SENGHGGNIQ WNFPPMVPMP GFCGPPIPFP 360 LMPPSVWPLV SPWPNGAWSA PWLGPSYSMS AAPPTSSSTC SDSGSPVLGK HPRDSDPRGG 420 EKAEKSLWIP KTLRIDDPDE AAKSSIWTTL GIEPGERGMF RAFQPKSGGR EQMSNAARVM 480 QANPAAQSRF ASFQETT

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MSYIMLCLIL VRLFKLAASY KIEHRYRDDV CQLIIARLAY HTVHGQDSCK DTGDTRITEE  60
NSCTPPDLNL SQPNNSGLNS SSACENQTSN GDEMTEPEST LEAAKTEGDG SNKEKVLKKP  120
DKILPCPRCN SMDTKFCYYN NYNIHQPRHF CRGCQRYWTA GGSMRNLPVG AGRRKSKSSS  180
TNCNGILIPG GSLAAPGGDS SVIPLPIKEN QPAVKFGSDS TLPNSMASLL RVEEQNKNSN  240
PASTAHPRNG ENQTCPPSAT TSDNPRIESV KAAVGVHQNG ITGDCNGVTP MPPIPCFPGP  300
PFMYPWNPAW NGVPAMAAPV CPVPAEPANC SENGHGGNIQ WNFPPMVPMP GFCGPPIPFP  360
LMPPSVWPLV SPWPNGAWSA PWLGPSYSMS AAPPTSSSTC SDSGSPVLGK HPRDSDPRGG  420
EKAEKSLWIP KTLRIDDPDE AAKSSIWTTL GIEPGERGMF RAFQPKSGGR EQMSNAARVM  480
QANPAAQSRF ASFQETT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358805	0.0	AK358805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083I10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182001.1	0.0	cyclic dof factor 2-like isoform X2
TrEMBL	M8BAI0	0.0	M8BAI0_AEGTA; Dof zinc finger protein
STRING	EMT03738	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-41	cycling DOF factor 2