PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03587
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family G2-like
Protein Properties Length: 403aa    MW: 43803.9 Da    PI: 10.1369
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03587genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.6e-32261316156
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
               k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  EMT03587 261 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 316
               68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.652258318IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-28259319IPR009057Homeodomain-like
SuperFamilySSF466892.24E-17259319IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-26261316IPR006447Myb domain, plants
PfamPF002498.0E-7263314IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDSSPSDLTL DYTPNGNGTA SAGGGYPKQA SPVVDHHHHL SAEQATTQKL QEFLARLDDE  60
RLKIDAFKRE LPLCMQLLNQ AMEAYRQQLE ACQMGSHGGA AARAPLVLEE FIPLKNIGID  120
AAEKAAGNAP SEKANWMVSA QLWNGPAAGD AAAKGPQTPK ERSEHPLDTS PMLGALDGGG  180
GNGVGAFLPF TKEKACMAES AALPELGLAP AEKDREADRK PYHDDSGSSG SVVSRRDVGA  240
PPTSTAPEGQ SVPPPPQTNR KARRCWSPEL HRRFVNALQI LGGAQVATPK QIRELMKVDG  300
LTNDEVKSHL QKYRLHTRRP MPAPSAPPPG APPKKFVNSK MFMDVKKSSQ TSNKFTIGKR  360
IIDFKKKKFV NSKMFMDMKK SSQTSNKFTI GKRIIDFKKV HQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-14261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-14261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-14261314154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-14261314154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-14261314154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-14261314154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-14261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-14261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-14261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-14261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-14261314255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-14261314255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184511.10.0myb family transcription factor EFM
SwissprotQ5VRW21e-114NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBLN1QTH50.0N1QTH5_AEGTA; Two-component response regulator ARR18
STRINGEMT035870.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97733338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-64G2-like family protein
Publications ? help Back to Top
  1. Kamrul Huda KM, et al.
    Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins.
    Plant Physiol. Biochem., 2014. 82: p. 229-38
    [PMID:24992889]