PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT03564

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NAC

Protein Properties

Length: 360aa MW: 40411.6 Da PI: 7.5595

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT03564	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.7	6.7e-51	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 l pGfrFhPtdeelv++yLkkk+++k++++ e i + diyk++PwdLpk + +++e+ewyf+++rd ky+++ r+nr+t++g+Wkatg+d++++s+ +++ EMT03564 13 LLPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIMQQDIYKFDPWDLPKlASTSSETEWYFYCPRDWKYRNSARPNRVTAAGFWKATGTDRPIYSSeGTRC 112 579*************************.89***********535556788**********************************856667 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vglkk+Lvfykgra +g ktdW+mhe+rl EMT03564 113 VGLKKSLVFYKGRAARGIKTDWMMHEFRL 141 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-56	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.02	13	172	IPR003441	NAC domain
Pfam	PF02365	1.6E-25	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEGRDDVKSD EILLPGFRFH PTDEELVSFY LKKKIQQKPI SIELIMQQDI YKFDPWDLPK 60 LASTSSETEW YFYCPRDWKY RNSARPNRVT AAGFWKATGT DRPIYSSEGT RCVGLKKSLV 120 FYKGRAARGI KTDWMMHEFR LPSLTDPSLP KRPIDKNIPL NDSWTICRIF KKTGSMAAQR 180 ALSHAWGAPL PGATEQQHLL SAMQTGQASH FASESSTRSL QVAAVAPSNQ FISFNCGPSP 240 QVFKGPTILP FQTQAPSHKP VLRTAPPSLF FDAHFGQPEQ IAGFVTGSSA DVNASMSCRD 300 QESSTTKHGG NFRSMNNEWE APGRLDFPFG LVEDSSDDWE CNIPWESFLS PTVPAEIPQH

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEGRDDVKSD EILLPGFRFH PTDEELVSFY LKKKIQQKPI SIELIMQQDI YKFDPWDLPK  60
LASTSSETEW YFYCPRDWKY RNSARPNRVT AAGFWKATGT DRPIYSSEGT RCVGLKKSLV  120
FYKGRAARGI KTDWMMHEFR LPSLTDPSLP KRPIDKNIPL NDSWTICRIF KKTGSMAAQR  180
ALSHAWGAPL PGATEQQHLL SAMQTGQASH FASESSTRSL QVAAVAPSNQ FISFNCGPSP  240
QVFKGPTILP FQTQAPSHKP VLRTAPPSLF FDAHFGQPEQ IAGFVTGSSA DVNASMSCRD  300
QESSTTKHGG NFRSMNNEWE APGRLDFPFG LVEDSSDDWE CNIPWESFLS PTVPAEIPQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-48	13	175	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-48	13	175	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-48	13	175	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-48	13	175	17	168	NO APICAL MERISTEM PROTEIN
4dul_A	8e-48	13	175	17	168	NAC domain-containing protein 19
4dul_B	8e-48	13	175	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190499.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	2e-90	FEZ_ARATH; Protein FEZ
TrEMBL	A0A453AFG5	0.0	A0A453AFG5_AEGTS; Uncharacterized protein
TrEMBL	N1QSV3	0.0	N1QSV3_AEGTA; Putative NAC domain-containing protein 9
STRING	EMT03564	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-92	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]