PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03563
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 387aa    MW: 43484.9 Da    PI: 6.6254
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03563genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.5e-51131411128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
               l+pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk + +++e+e yf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ +++ 
  EMT03563  13 LMPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKlASTGGETESYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIYSSeGTRC 112
               689***************************.89***************5255557789*************************************856667 PP

       NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
               vglkk+Lvfykgra +g ktdW+mhe+rl
  EMT03563 113 VGLKKSLVFYKGRAARGIKTDWMMHEFRL 141
               ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5512173IPR003441NAC domain
PROSITE profilePS5100555.58813173IPR003441NAC domain
PfamPF023651.2E-2415141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MESRNDVKSD EILMPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQLDI YKFDPWDLPK  60
LASTGGETES YFYCPRDRKY RNSARPNRVT AAGFWKATGT DRPIYSSEGT RCVGLKKSLV  120
FYKGRAARGI KTDWMMHEFR LPSLADTSLP KSRPIDKNIP LNDSWTICRI FKKTSSMAAQ  180
RALSHTWGAP LPGETEQDLF SALQPVQALH FASESSSSSL QVAAALPSNQ FNGKYGFQGQ  240
HQQFQKPSNT QENGSSCKVI SFNCGPSLQV LKGPIILPFQ TQPPSQRPML HTSPPIFFDA  300
QFGQPEQITG VVVTGSSEDV NADMSCREQE SSTTKHDDTF SMKNELEAPG RLNFPFDLGA  360
DSSDDWECNI PWESFLSPTA PDEIIQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-491317617168NO APICAL MERISTEM PROTEIN
1ut4_B3e-491317617168NO APICAL MERISTEM PROTEIN
1ut7_A3e-491317617168NO APICAL MERISTEM PROTEIN
1ut7_B3e-491317617168NO APICAL MERISTEM PROTEIN
3swm_A4e-491317620171NAC domain-containing protein 19
3swm_B4e-491317620171NAC domain-containing protein 19
3swm_C4e-491317620171NAC domain-containing protein 19
3swm_D4e-491317620171NAC domain-containing protein 19
3swp_A4e-491317620171NAC domain-containing protein 19
3swp_B4e-491317620171NAC domain-containing protein 19
3swp_C4e-491317620171NAC domain-containing protein 19
3swp_D4e-491317620171NAC domain-containing protein 19
4dul_A3e-491317617168NAC domain-containing protein 19
4dul_B3e-491317617168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190502.10.0protein FEZ-like
SwissprotQ9ZVH02e-96FEZ_ARATH; Protein FEZ
TrEMBLA0A453AFF70.0A0A453AFF7_AEGTS; Uncharacterized protein
TrEMBLN1QUL20.0N1QUL2_AEGTA; Putative NAC domain-containing protein 9
STRINGEMT035630.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.18e-96NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]