PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT03488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | CAMTA | ||||||||
Protein Properties | Length: 99aa MW: 12200.8 Da PI: 7.7386 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 78.9 | 6.5e-25 | 20 | 91 | 4 | 75 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 k+ w k++e+++iL+n+e++ ++ ++++p+sgs++L++rk+ r++r DGy+w+k+ dgk+ E+he L v EMT03488 20 GvKTVWFKPREVLEILQNYERFPIQ-YKTQKPPSGSWFLFDRKVHRFYRSDGYQWQKRMDGKSDYEAHEYLEV 91 44789*****************965.56789**************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 31.51 | 14 | 99 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.5E-7 | 17 | 99 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.9E-21 | 22 | 91 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MSFISYLVDS DFDIQNLQHG VKTVWFKPRE VLEILQNYER FPIQYKTQKP PSGSWFLFDR 60 KVHRFYRSDG YQWQKRMDGK SDYEAHEYLE VLFNVYLVY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197082.1 | 4e-57 | calmodulin-binding transcription activator 4-like, partial | ||||
TrEMBL | N1QTG3 | 2e-67 | N1QTG3_AEGTA; Calmodulin-binding transcription activator 2 | ||||
STRING | EMT03488 | 3e-68 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15485 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 2e-22 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |