PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT03425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 514aa MW: 57277.5 Da PI: 7.1209 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.9 | 7e-52 | 155 | 285 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ ++ EMT03425 155 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLGsGS 254 69****************************.9***************943444442456*************************************97677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g++ktLvfy grap+g+ktdW+mheyrl EMT03425 255 RRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 285 88***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-59 | 146 | 305 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.306 | 155 | 305 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 156 | 285 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MATEDTDPKS SATVAAAIPF FPHLYEHENK RDIHARSSSA ARLVTTRRGL RVERRTRTHS 60 SSRHRFLNTV LLLRSSSSRL AACTAALCAT TDFFVTDTPD PDDDYFPDVD NLLHDMATEN 120 TDPKSSATVA AVVPSILGPA RERASMHPSG GALSVPPGFR FHPTDEELLY YYLRKKVAYE 180 AIDLDVIREI DLNKLEPWDL KDRCRIGTGP QNEWYFFSHK DKKYPTGTRT NRATTAGFWK 240 ATGRDKAIFL GSGSRRIGMR KTLVFYVGRA PHGKKTDWIM HEYRLDEDNV EVQEDGWVVC 300 RVFTKKSYTR GVNPAEMAGY DDDELLHPFP VPSSTAGAMQ MITDQKHIMH NPGHLMQQQQ 360 QQHYDFPSFD ASMQLPQLMS AEHEQQTLSS FLPGAPAAVA MSSHELECSQ NLMKLTSSGA 420 NGMLHHGGGG GGGDPRFPGT DWSILDKLLA SHQNLDQLFQ GKVAAAAAAS MVPYQQQHRQ 480 QLMEQLGGSS TSSMQRMPLQ YLGCEAADLL RFSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-50 | 153 | 307 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 153 | 307 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 153 | 307 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 153 | 307 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-50 | 153 | 307 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-50 | 153 | 307 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-50 | 153 | 307 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-50 | 153 | 307 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-50 | 153 | 307 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-50 | 153 | 307 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-50 | 153 | 307 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-50 | 153 | 307 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-50 | 153 | 307 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 153 | 307 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028186 | 0.0 | AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169406.1 | 0.0 | NAC domain-containing protein 76 | ||||
TrEMBL | N1QTF8 | 0.0 | N1QTF8_AEGTA; Uncharacterized protein | ||||
STRING | EMT03425 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 3e-94 | NAC family protein |