PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT03280

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bZIP

Protein Properties

Length: 324aa MW: 34704.8 Da PI: 7.4551

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT03280	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.2	4.1e-09	58	96	12	50
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 NR +A rs +RK +i eLe+kv +L++e ++L +l EMT03280 58 ANRQSAARSKERKARYITELERKVHTLQTEATTLSAQLT 96 6*********************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-10	44	111	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.52E-21	55	101	No hit	No description
Pfam	PF00170	4.3E-7	55	96	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-9	55	102	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-7	55	105	No hit	No description
PROSITE profile	PS50217	9.243	55	112	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAAAGAEGCS PTCSRLRRPC PPSSCLSSPP STPSVPRGDP SHPEAPLDFE LVVGRILANR 60 QSAARSKERK ARYITELERK VHTLQTEATT LSAQLTLFQR DTTGLSAENT ELKIRLQAME 120 QQAQLRDALN NTLKQELERL KIATGEMTKP DEAYNTGMHH VPYNPSFFQL SEQHTPQHHS 180 SVHQLPSQFQ PPHPNVPSHQ MLSHPNTFPD MMQQDSLGRF QGLDIGKGSV AVKLEAEAAA 240 KSEGSSISAA PSSHGAAAAQ SGEGKSRAQL HDGSNGRSAA LVLTADGDPW IAAHGGGRLP 300 ASLPMAEKGE GRLTAFLRLA DGGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374900	0.0	AK374900.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3079L07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158207.1	1e-137	transcription factor RF2b-like isoform X1
Swissprot	Q6S4P4	2e-88	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	R7W1M7	0.0	R7W1M7_AEGTA; Transcription factor RF2b
STRING	EMT03280	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	6e-56	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]