PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT03085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 26943.9 Da PI: 9.5313 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++ g+W++++r g+++++k+c++rw +yl EMT03085 16 KGLWSPEEDEKLYNHIIRHVVGCWSSVPRLAGLNLCGKSCRLRWINYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg + ++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w EMT03085 69 RGCFLQQEEDHIVALHHILGNR-WSQIASHLP-GRTDNEIKNFWKL 112 678889****************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 11 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.626 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.84E-25 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-7 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 21.993 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 66 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.01E-8 | 74 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRPSSGGAG QPKLRKGLWS PEEDEKLYNH IIRHVVGCWS SVPRLAGLNL CGKSCRLRWI 60 NYLRPDLKRG CFLQQEEDHI VALHHILGNR WSQIASHLPG RTDNEIKNFW KLHQKKKLRQ 120 QSIDPATHKP MGATATAALP DAEEEDLLRW KGGRGLRRRR VLRRGRQLRV GRPGEPGLRG 180 ELQMLDGEVG SVLDGEVLHW AKAELAFADM EYEFSLPCQE QSLLPNFEFN MEHYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 10 | 118 | 1 | 108 | B-MYB |
1h8a_C | 5e-21 | 12 | 118 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364378 | 1e-170 | AK364378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2024H18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180810.1 | 2e-95 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 5e-82 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | N1QQJ8 | 1e-173 | N1QQJ8_AEGTA; Myb-related protein Hv33 | ||||
STRING | EMT03085 | 1e-173 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-62 | myb domain protein 86 |