PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03011
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 631aa    MW: 69463.3 Da    PI: 8.0179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.2e-20145191148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++d+vk++G+  W+ Iar ++ gR +kqc++rw+++l
         EMT03011 145 KGPWTQEEDDKIIDLVKKYGPTKWSVIARSLP-GRIGKQCRERWHNHL 191
                      79******************************.*************97 PP
2Myb_DNA-binding60.43.9e-19197240146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE++ l++a++++G++ W+ Ia+ ++ gRt++++k++w++
         EMT03011 197 KDAWTAEEEQALINAHREYGNK-WAEIAKVLP-GRTDNSIKNHWNS 240
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-11104149IPR009057Homeodomain-like
SuperFamilySSF466895.38E-6108149IPR009057Homeodomain-like
PROSITE profilePS500905.506114139IPR017877Myb-like domain
PROSITE profilePS5129431.783140195IPR017930Myb domain
SuperFamilySSF466891.65E-32142238IPR009057Homeodomain-like
SMARTSM007178.5E-19144193IPR001005SANT/Myb domain
CDDcd001671.03E-16147191No hitNo description
PfamPF139211.7E-18148208No hitNo description
Gene3DG3DSA:1.10.10.601.6E-27150198IPR009057Homeodomain-like
SMARTSM007171.3E-18196244IPR001005SANT/Myb domain
PROSITE profilePS5129424.45196246IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-25199246IPR009057Homeodomain-like
CDDcd001673.60E-15199242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MSPPVSGSVN SISGLRSMQL AKDACFECGV SLTMVVAPCN ICYLDGKLRA FIFVVCGDTG  60
SQNLLPWITQ ASKTGSHDTC MPDFTGYIST RIFRILASLR FQANKWAYKE SEGWLDITRA  120
EFFPDRTEVQ CLHRWQKVLN PELIKGPWTQ EEDDKIIDLV KKYGPTKWSV IARSLPGRIG  180
KQCRERWHNH LNPDIRKDAW TAEEEQALIN AHREYGNKWA EIAKVLPGRT DNSIKNHWNS  240
SLRKKLDVYG TRNILAIPRL VGHDDFNDKQ KPVASEGHLD LNTVPGITSK HLPEIAHHSN  300
FSSHLQSYKL AHAKDRSGFL SISFLPTVQP PTSYEVSSVV NGSAVTSAAQ GLESDSVRDK  360
GLEIISVHEK GLKVDSTLDT VGKPDSTQLE AVPAKGEESS LKNDAQSSLG PLCYQIPNMN  420
DVAPASSSLI SEHQTGHQTS EHCRNGALSP NGCTTPTKGT MSVQLSVDSI LKIAADSFPV  480
TPSILRRRKR ERPTPASDLK FGEPNTDSFY TPAGKRPTTD TPESFRTASF LSLGSLDGLP  540
SSARGFDVSP PYRIRAKRMC LTKSVEKQLD FSSNGLGTCG SEVLNSPHQN SQSTHSLSEA  600
SIMKEKELNG HVTQLETSTK NIAYTTNMDV T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-6512024633159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-6512024633159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2364940.0HQ236494.1 Triticum aestivum MYB3R transcription factor (MYB3R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192352.10.0myb-related protein B-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLN1QUG00.0N1QUG0_AEGTA; Myb-related protein 3R-1
STRINGEMT030110.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-81myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]