PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02832
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARR-B
Protein Properties Length: 595aa    MW: 66097.7 Da    PI: 5.0533
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02832genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.68.7e-26202255155
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  EMT02832 202 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 255
               68*******************.9*******************************8 PP
2Response_reg67.17.9e-23131321109
                   EEEESSSHHHHHHHHHHHHHTTC..........EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
  Response_reg   1 vlivdDeplvrellrqalekegy..........eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                   vl+vdD+p+ +++l+++l+k  y           +v+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge + 
      EMT02832  13 VLVVDDDPTWLKILEKMLRKCSYedllpiitteWSVTTCGLARVALEILRERKnrFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSR 108
                   89*****************6666222455544447899999999*****777777**********************6654.8************** PP

                   HHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                   + + ++ Ga d+l Kp+ ++el++
      EMT02832 109 VMKGVQHGACDYLLKPVRMKELRN 132
                   *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-1591586IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-3010144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-4010155No hitNo description
SMARTSM004485.6E-2511134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.03212138IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-2013133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.36E-2614137No hitNo description
SuperFamilySSF466891.08E-17199258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-28200259IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22202255IPR006447Myb domain, plants
PfamPF002499.4E-8204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MADASAFPYG LRVLVVDDDP TWLKILEKML RKCSYEDLLP IITTEWSVTT CGLARVALEI  60
LRERKNRFDI VISDVNMPDM DGFKLLEHIG LEMDLPVIMM SIDGETSRVM KGVQHGACDY  120
LLKPVRMKEL RNIWQHVYRK KMHEVKEIEG HDSCDDLQIL RYGFEGFDEK GLFMTVDSDA  180
TRKRKDVDHG DQDSSDGATA KKARVVWSVD LHQKFVNAVN QIGFDKVGPK KILDLMNVPG  240
LTRENVASHL QKYRLYLGRL QKQNEERILG SARQDFSTKG PSSENLNLRS SFQEQPSNTS  300
SGYPHASQKI QGQSSVSDSQ LEETKRTVPL PAPDRSMNSV SSAAEPQNVA GVSPIGGVLS  360
FKGLPVNQDR KPSETMILEC QAWTGGVPAK QFMQYPKHNH ARCDLLGDYA CLPKPDLEHP  420
TAPGHLFTPP PLISMSCSTE MDARNFSDVK PALLDCIKSF SPALTCTADS VSVQISDSVV  480
TSTDAADRKF SSVEGLPSTK DCYFGQTSNQ GSWLRSQEEP SIICGADFAS LPEDLPGYPL  540
QGGVSFENVG LSSIDLFHYN DAMILSGLQS NWYDDQDHFS SETTDYPLMD GCLFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-18201260463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147288.10.0two-component response regulator ORR26-like
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLN1QT990.0N1QT99_AEGTA; Two-component response regulator
STRINGEMT028320.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-110response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]