PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02781
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 452aa    MW: 50107.3 Da    PI: 5.0508
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02781genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.22.2e-082883081535
      GATA  15 gpdgnktLCnaCGlyyrkkgl 35 
               + +g++tLCnaCGl+++ k++
  EMT02781 288 WTEGPRTLCNACGLMWANKRR 308
               569**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.18884119IPR010399Tify domain
SMARTSM009793.3E-1184119IPR010399Tify domain
PfamPF062001.3E-1286118IPR010399Tify domain
PfamPF062031.5E-11151187IPR010402CCT domain
PROSITE profilePS5101711.132151193IPR010402CCT domain
Gene3DG3DSA:3.30.50.101.9E-5290309IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MNAYEHAQEQ EMEEEEEEEE EEEEEEMEEE EDEGEGDGQH EHGQHGGNGE SVPMDAEAVA  60
QAAAAAAAGA PLDPHGAMVS AIVPPATGNQ LTLSFQGEVY VFDSVSPDKV QAVLLLLGGR  120
ELNPGMGAGA SSSTPYKVEF TMIQRLNFPH RVASLMRFRE KRKERNFDKK IRYTVRKEVA  180
LSLCRVKYHW YAMILVGCNT SVALLDFGCS VIEANLHLQN QNLMTELLNW QLQMAPQTGD  240
QWKVDLRLLL RATKKHNLWQ IIHRAGCSSS LGYSDFLTLL VVQASLTWTE GPRTLCNACG  300
LMWANKRRPP EAPVHSGRLK RADNVKRGRG RPNLTWEEFV KRDLKDWSIT EELAMDGVYL  360
DLFMYLHNDS IGRKTLCPFL FAGMLRDLSK STPPSLQMVS TGPNDSNGNT LSQQNGSTLS  420
QQNGNAAIVP FAEQQNPAPA TDANGHGHGS ST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631601e-177AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192764.12e-84GATA transcription factor 20-like isoform X1
RefseqXP_020192766.12e-84GATA transcription factor 20-like isoform X2
TrEMBLN1QSE80.0N1QSE8_AEGTA; GATA transcription factor 27
STRINGEMT027810.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-38ZIM-like 1