PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT02729

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRF

Protein Properties

Length: 469aa MW: 50564.3 Da PI: 7.4786

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT02729	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.2	6.8e-24	79	122	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e EMT02729 79 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 122 69***************************************986 PP
2	QLQ	61.5	2.3e-21	12	48	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan vP++L+++i++ EMT02729 12 GPFTPSQWMELEHQALIYKYLAANIAVPHNLVVPIRR 48 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.1E-12	12	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.1E-15	13	47	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.983	13	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	78	122	IPR014977	WRC domain
Pfam	PF08879	3.7E-20	80	121	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MDRKKGLSSV RGPFTPSQWM ELEHQALIYK YLAANIAVPH NLVVPIRRSV TSLYPSAYFG 60 SSTLGWGPFQ LGYSGSADLE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV 120 EGQPGHAAKA MPATAAAAAQ PGALATGGGG GAPAGAAICH EQQPLKNYAA STIDPCSLQY 180 NREMVSKQQH ECEQVQDSDT LSMLTSMSAR NTNAGSMFPF SKEHHNHNPF EVTSSRPDYG 240 LVSSDSLMSS PHSSLENVNL LTSQRALSSE QQSSLSLQHF ADWPRTPSQQ GQGGGLSWPD 300 AEDMQAHQRT QLSVSAVPMA SSDLSSASTS PIHEKLMLSP LKLSREYSPI GLSVAATAAV 360 AKDEGEANWM PMFRDSSMGG PLGEALNKNN GGNMEAKSYL SASLNLMTDA WDSSPLESSP 420 VGVLQRTAFG SVSSSTGSSP RQEYHGVYDG NPRDDLGSIV VNHPSIRLM

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MDRKKGLSSV RGPFTPSQWM ELEHQALIYK YLAANIAVPH NLVVPIRRSV TSLYPSAYFG  60
SSTLGWGPFQ LGYSGSADLE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV  120
EGQPGHAAKA MPATAAAAAQ PGALATGGGG GAPAGAAICH EQQPLKNYAA STIDPCSLQY  180
NREMVSKQQH ECEQVQDSDT LSMLTSMSAR NTNAGSMFPF SKEHHNHNPF EVTSSRPDYG  240
LVSSDSLMSS PHSSLENVNL LTSQRALSSE QQSSLSLQHF ADWPRTPSQQ GQGGGLSWPD  300
AEDMQAHQRT QLSVSAVPMA SSDLSSASTS PIHEKLMLSP LKLSREYSPI GLSVAATAAV  360
AKDEGEANWM PMFRDSSMGG PLGEALNKNN GGNMEAKSYL SASLNLMTDA WDSSPLESSP  420
VGVLQRTAFG SVSSSTGSSP RQEYHGVYDG NPRDDLGSIV VNHPSIRLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376067	0.0	AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187288.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	R7W095	0.0	R7W095_AEGTA; Uncharacterized protein
STRING	EMT02729	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-46	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]