PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28439 Da PI: 6.7801 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v+q G g+W+++a+ g++R++k+c++rw +yl EMT02668 17 KGPWTALEDRLLTEYVQQQGEGSWNSVAKLTGLRRSGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ +++++++lG++ W++Iar+++ gRt++++k++w+++ EMT02668 70 RGKITADEETVILQLHAMLGNR-WSAIARCLP-GRTDNEIKNYWRTH 114 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.701 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.08E-10 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 22.948 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 72 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.95E-11 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAMDAMSSAV LQGAWRKGPW TALEDRLLTE YVQQQGEGSW NSVAKLTGLR RSGKSCRLRW 60 VNYLRPDLKR GKITADEETV ILQLHAMLGN RWSAIARCLP GRTDNEIKNY WRTHFKKARP 120 SRRARAQLLH QYQLQQQQQH RQYLHALHLL QQQQQEMQMQ LQENQQQQQQ QQQGMMMAQQ 180 SPPEEDQAVI TTVGNMNSMG TAECYCPCPA ASAVLDLPLP ADDEDALWDS LWRLVDGEDG 240 SSGGDSGEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 10 | 117 | 20 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960450 | 1e-177 | EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182485.1 | 0.0 | transcription factor WER-like | ||||
TrEMBL | R7W0L6 | 0.0 | R7W0L6_AEGTA; Myb-related protein 305 | ||||
STRING | EMT02668 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13228 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-58 | myb domain protein 305 |