PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02468
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 301aa    MW: 32435.7 Da    PI: 5.8628
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02468genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS33.17.4e-113078250
      GRAS  2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALa 50
              ++lLl+cA a++s+d +laq++++ l+++as +gdp+qRl++ ++++L+
  EMT02468 30 QQLLLHCAAALESNDVTLAQQAMWVLNNIASAQGDPNQRLTSSLLRGLE 78
              699****************************************999996 PP
2GRAS1172.3e-3678298160373
      GRAS 160 etgerLakfAeelgvpfefnvl................vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
               e+g rLa+fA++ gv++efnv+                ++++l+++  ++++Lr++ gEal+Vn++  l ++       +  rd ++++v+ l P +v+v+
  EMT02468  78 EIGLRLANFAKSKGVHLEFNVVnkstatsppspaklqtLCQELACVlsDPSALRLRDGEALVVNCQSWLRHVA------PGSRDGFVDAVRALGPCLVTVT 172
               6899******************9999999998888777666666668899*******************9998......445778**************** PP

      GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
               +++ad++s+s+++r++ ++++++ lfd+l++++pr+s  r   E++ +g++i++v a +g e     e+ ++  er+++ GF  v ++e++++++++ll++
  EMT02468 173 DEDADLDSPSLATRIAGCFNFHWILFDALDTSAPRDSPRRLEHEAA-VGQKIESVPAPQGPE---LSESGARLGERMRRKGFAGVGFGEDEVAEVRHLLSE 269
               ********************************************99.**************9...6666667779************************** PP

      GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
               ++  g+ v+ e++ lvl+Wk+++ v+++aW
  EMT02468 270 HA-TGWGVKREEDMLVLTWKGHAAVFTTAW 298
               **.99************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.0191280IPR005202Transcription factor GRAS
PfamPF035148.1E-3478298IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEQELRSGGA VRAQSTLCFS GALVDGPRIQ QLLLHCAAAL ESNDVTLAQQ AMWVLNNIAS  60
AQGDPNQRLT SSLLRGLEIG LRLANFAKSK GVHLEFNVVN KSTATSPPSP AKLQTLCQEL  120
ACVLSDPSAL RLRDGEALVV NCQSWLRHVA PGSRDGFVDA VRALGPCLVT VTDEDADLDS  180
PSLATRIAGC FNFHWILFDA LDTSAPRDSP RRLEHEAAVG QKIESVPAPQ GPELSESGAR  240
LGERMRRKGF AGVGFGEDEV AEVRHLLSEH ATGWGVKREE DMLVLTWKGH AAVFTTAWAP  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B8e-1778301200421Protein SHORT-ROOT
5b3h_E8e-1778301200421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154951.11e-154scarecrow-like protein 32
TrEMBLN1QUA60.0N1QUA6_AEGTA; Uncharacterized protein
STRINGEMT024680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-46GRAS family protein