PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 205aa MW: 21941.8 Da PI: 8.9672 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00074 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H +H EMT02428 61 FVCKTCGRAFETFQALGGHRTSH 83 89*********999998888777 PP | |||||||
2 | zf-C2H2 | 15 | 7.1e-05 | 111 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg F + L H+r+H EMT02428 111 HDCHICGLGFETAQALGGHMRRH 133 56********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.42 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.79E-7 | 61 | 133 | No hit | No description |
Pfam | PF13912 | 8.5E-10 | 61 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.049 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.9E-8 | 111 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGAGMKRARE EAPFVSLALS LSTDSSTSTT TSADSASAPA AAAGKRTRRG RAVATSGEGE 60 FVCKTCGRAF ETFQALGGHR TSHLRGRHGL ELGVGVARAI KERKRQEDKQ HDCHICGLGF 120 ETAQALGGHM RRHREEMEEM ALSGADLSDS VFYVLFAYFD ESMSSIGGFQ VLGKDSMDYG 180 IRSGKILSLG MPKAPQVNIQ GQPRA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369683 | 1e-102 | AK369683.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095K21. | |||
GenBank | AK372198 | 1e-102 | AK372198.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P16. | |||
GenBank | EU812563 | 1e-102 | EU812563.1 Hordeum vulgare subsp. vulgare Rpg4 gene, complete sequence; RGA1 (RGA1) gene, complete cds; Rpg5 gene, complete sequence; PP2C (PP2C) gene, complete cds; and ADF3 gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198413.1 | 5e-99 | zinc finger protein 555-like | ||||
TrEMBL | N1QQ41 | 1e-147 | N1QQ41_AEGTA; Uncharacterized protein | ||||
STRING | EMT02428 | 1e-148 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 8e-14 | C2H2 family protein |