PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 690aa MW: 79199.9 Da PI: 9.5719 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 668 | 689 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+++++ C+y + CkF+Hg EMT02298 668 ICRYYQQGLRCPYEGDCKFSHG 689 8******88************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.720.30 | 1.7E-9 | 110 | 153 | IPR003034 | SAP domain |
SuperFamily | SSF68906 | 2.56E-7 | 111 | 153 | No hit | No description |
PROSITE profile | PS50800 | 8.548 | 118 | 152 | IPR003034 | SAP domain |
PROSITE profile | PS50103 | 13.112 | 663 | 690 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-5 | 664 | 689 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-4 | 665 | 690 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 667 | 689 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-5 | 668 | 689 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MAAAAARTGL PPADHDPLEG AESESEEEVE SGEERGDDGS EAETLADLYG PDAGSDKDPS 60 FDPAADKRAV GEAALWSRMA RLSISARKGR KAPVALEMGN EDIDLLAMVD KLMHDGQLEK 120 LKVYECKAYL RIHKLRLGGK KEELLNRIRD HIEVKLFGDV KYPVSSFVLN CKGDACKGDV 180 VMFEQNIYRR KKGDPRGIKG RLCGQRTNAG RIIKESYGTA KQQHTFTPWP DEKERSRVLE 240 EKHARGFQAR KSREVRIHEK EIDKMRRFNR FNEGRSDSLQ QGEPWNARQQ QISSKQNPAV 300 HLFHQQFLYQ GPSVQHGKPE KTRQQQILSR PTTSEQIFKH PTQHDNHRPT PAQQMFKNPQ 360 EHNNHHQQQN KVLPQEGTTK TVSILGRAPC LHYGGPGNAV QQQKLSKPTP MEQIRNQSQP 420 LKHEHRNLVL PQEDAKKGTN RVHSIDHGKA PCLQYAGPGN AMQQQSARPA LPQQIKNPPQ 480 YAGPGNAMQQ QSSRPALPQQ IKNPPQPPKH QHTEVLRQED GNRTYRVEPV DRRNNNYHNT 540 TYDESAFQGR GTQHAKTHQH GSNGHPHAHG DSQWHQPLRP RIQDFSSRNQ EGDYRDHRQT 600 TQEQYNPEER YHHNQYGRGQ MIQDQYQPQK IHHQNGHDSW RMNHNQYHPQ ENHHQNYRHA 660 QQFPALKICR YYQQGLRCPY EGDCKFSHGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374966 | 0.0 | AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151517.1 | 0.0 | zinc finger CCCH domain-containing protein 62-like isoform X1 | ||||
TrEMBL | R7W0C6 | 0.0 | R7W0C6_AEGTA; Zinc finger CCCH domain-containing protein 62 | ||||
STRING | EMT02298 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13107 | 20 | 22 |