PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02284
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 323aa    MW: 35105.7 Da    PI: 5.3283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02284genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-151564148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv+ +++ Gg+  +W+  ++  g++R++k+c++rw +yl
         EMT02284 15 KGPWTEEEDKALVEHIQKRGGNvgSWRGLPKAAGLNRCGKSCRLRWTNYL 64
                     79**********************************************97 PP
2Myb_DNA-binding50.45.3e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
         EMT02284  70 RGNFSDEEERLIITLHAGLGNK-WATIATHLE-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-21767IPR009057Homeodomain-like
PROSITE profilePS5129415.8191064IPR017930Myb domain
SuperFamilySSF466892.88E-2712111IPR009057Homeodomain-like
SMARTSM007174.4E-101466IPR001005SANT/Myb domain
PfamPF002496.6E-131564IPR001005SANT/Myb domain
CDDcd001674.06E-81764No hitNo description
PROSITE profilePS5129426.4965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2568119IPR009057Homeodomain-like
SMARTSM007176.9E-1569117IPR001005SANT/Myb domain
PfamPF002494.9E-1470114IPR001005SANT/Myb domain
CDDcd001673.45E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGNVGSW RGLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFSDEEERL IITLHAGLGN KWATIATHLE GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ QLPPDHHLDG ASAPLLPEAL LWAAAAASLG GLDTGALRQA QLLQQLLQTI  180
GSNNDATNLI ANLAAANSVL NSSSSIVPSH LLQDQLNMYS GANCMQPGYL CNTSNFADQD  240
VVQQQLINDM SPGTSSFATA EPADQLCNTT AAFASPDVAP AVDVLPVQEF AGLMVPMELQ  300
LPNLCSLESD SFWKELLDDG YLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-28151194105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-28151194105C-Myb DNA-Binding Domain
1msf_C6e-28151194105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432711e-137AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169249.10.0transcription factor MYB39-like
RefseqXP_020198492.10.0transcription factor MYB39-like
TrEMBLN1QQ120.0N1QQ12_AEGTA; Transcription factor MYB39
STRINGEMT022840.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-69myb domain protein 9