PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02191
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 484aa    MW: 53268.6 Da    PI: 7.4978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02191genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-056789123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y C+ C+k F r  nL+ H r H
  EMT02191 67 YICEVCHKGFQRDQNLQLHRRGH 89
              89*******************88 PP
2zf-C2H210.90.0014143165123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               +kC  C+k +  +s+ k H + +
  EMT02191 143 WKCDRCSKKYAVQSDWKAHTKIC 165
               58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.75E-76689No hitNo description
Gene3DG3DSA:3.30.160.602.4E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0386789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7416789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035568108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.75E-7138163No hitNo description
SMARTSM00355230143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSHTSEEESL SSFQQQPKLE VGAAGPSRGD PAAMPVVKKR RGHPGNPDPD VEVVALSPKT  60
LVATNRYICE VCHKGFQRDQ NLQLHRRGHN LPWKLKQRSS TDAKKKVYIC PEVTCPHHDA  120
TRALGDLTGI KKHFSRKHGE KKWKCDRCSK KYAVQSDWKA HTKICGTKEY RCDCGTIFSR  180
KDSFITHRAF CDVLAEDNSR VNHSLATMVG SLHGQHDMYS HGVPSPTDMV ANMSSNDHNS  240
DMHLRSLSPY ALITRNTALF SNQIPHKDPG FPLDGSASGY PYMSMNSPYM SATALLQKAA  300
EMGAKTSQDP ISPLLLKGFA NNFTSARDHM GISSGSQGDS MGNSAANSVC MKAAEDESMN  360
GHNNILINSA WTSGMMTPTT VPLIGLMNNP FSMRQEKESP QIMPDIQTQH NRQENISGVG  420
DAGLTQDFLG LGGNGNLDIS SGTYNTDVTA LSYSDEQQKN QEHMYSYHES SLDSTALDKP  480
MWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32139202366Zinc finger protein JACKDAW
5b3h_F1e-32139202366Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163244.10.0protein indeterminate-domain 9-like
TrEMBLA0A453IWS80.0A0A453IWS8_AEGTS; Uncharacterized protein
STRINGEMT021910.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2