PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02182
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 945aa    MW: 105357 Da    PI: 8.506
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02182genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14412493179
               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
               f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+
  EMT02182 412 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDT 493
               89**************************555566778***************9989999999***9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-25407547IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-16409493IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-18410493No hitNo description
SMARTSM010191.1E-11412505IPR003340B3 DNA binding domain
PROSITE profilePS508638.557412514IPR003340B3 DNA binding domain
PfamPF023621.6E-11412493IPR003340B3 DNA binding domain
PROSITE profilePS5105014.033698748IPR011124Zinc finger, CW-type
PfamPF074962.0E-10703745IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 945 aa     Download sequence    Send to blast
MQHIKQRWMA PFNPPSCGVR LATVVRTVVS MFYFVLPMGM DEKWRKSVWW RIAWWEAGSG  60
SFEHGTFCET FHSEVAGWRK CEACGKRLHC GCIVSVHAYA LLDAGGVDCI LCARKSYAAM  120
APSQMWSTPT VHMPQNVADR KDSYVKSWRP PTGQISSQWR QNHQLWNMST IQADLQQRLA  180
YEFDRPSGSE KLPPGRTFIH AQEKKSDDMH DRPTTPAGMG QIIRDRYANG LGQQTSMDPT  240
HSSTPYQREG PNPNSLHDPS HHVGESDPLS SRKGIISDGG STVSTGFKLD SHHPSILKDD  300
AASTLPTMGG YTITNYPPVP GRSDHLRIIP NNPQQPPTTV PLSVVQKQFY SHSVIEPNYQ  360
AQFRNGKPRM DPKARSELLP RYWPRITDKE LQHLSGEYPK NSTSNSVITP LFEKMLSASD  420
AGRIGRLVLP KKCAEAYFPP ISQPEGLPLK VQDASGKEWV FQFRFWPNNN SRMYVLEGVT  480
PCIQSMHLQA GDTGSKQGLT GRRATMLVKT TTVNDNHFGM LVKVSFSRID PEGKLVMGFR  540
KTKTQEQIFR QEEPTKPANA APNLPDVNIN VTAPDSSPNS SLVRPNKVNT ENKDSSPVEQ  600
AASKIDKGGV AQKEGPGTVR TSPGPVKRKA TSIGPKIKRF RIDNEESMEL KITWEEAQEL  660
LRPPLKAPSV VIVDGHEFEE YEEPPVLGRK TYFVTDQSGE NHQWAQCEDC SKWRKLPIDA  720
LLPSKWTCSD NKWDPERMTC VSPQEASMEE LAELIPIKAG AAKKAKLRMD TDSIDVSDGL  780
DTLANLAILG EGESLPSQPT TKHPRHRPGC SCIVCIQPPS GKGPKHKQTC TCNVCMTVRR  840
RFRTLMLRRE KRASEKESEE PPRKKEQGQS SESPQDPLLA STSPTSTPQK VNGNGDDAEE  900
AVEHSMASSP MKNQIDLNIQ PEREDEQSPK SDAVGAMRLP RENAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-553845421123B3 domain-containing transcription repressor VAL1
5yzz_C2e-553845421123B3 domain-containing transcription repressor VAL1
5z00_C2e-553845421123B3 domain-containing transcription repressor VAL1
5z00_G2e-553845421123B3 domain-containing transcription repressor VAL1
5z00_K2e-553845421123B3 domain-containing transcription repressor VAL1
5z00_M2e-553845421123B3 domain-containing transcription repressor VAL1
6j9a_A2e-553845422124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159212.10.0B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLN1QS080.0N1QS08_AEGTA; B3 domain-containing protein
STRINGEMT021820.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-137HSI2-like 1