PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 1059aa MW: 118158 Da PI: 4.7737 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.5e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + + ++kqck rw+ +l EMT02094 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RQSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.8e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l EMT02094 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.478 | 2 | 53 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.14E-11 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 3.9E-12 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 2.84E-20 | 33 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.053 | 54 | 107 | IPR017930 | Myb domain |
CDD | cd11659 | 8.92E-31 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.0E-59 | 406 | 654 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1059 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRQ SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHK KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT 240 TIEELEGRRR VDVEAQLRKQ DIAKNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP 300 QISDHELEEI AKMGNAGDPA LAEELGEGST ATRTLLANYS QTPRLGMTPL RTPQRTPGGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KKEIQTPNPM ATPLASPGPG 420 VTPRIGLTPS RDGNSFGLTP KGTPFRDELH INEEVEMQDS AQLELRRQAE LRRGLRSGFA 480 SIPQPKNEYQ IVMPPITEEK EEAEERIEED MSDRLARERA EEQARQEALL RKRSKVLQRS 540 LPRPPAASVE ILRQSLIKGG ESRSTFVPPT SLEQADELIN EELLRLLEHD NAKYPLDEQT 600 QREKKKGSKR QTNGAAFVPE IEGFDEHELK EASSMVEEEI QYLRVAMGHE NESFEDFVKS 660 HDACQEDLMF FPANSSYGLA SVAGNADKIS ALQHEFEMVK KRMDDEAKKA SRLEQKIKLL 720 TQGYQARAAK LGSQIQDTFK QMNTAATELE CFQELQKQEQ MAGAYRVRNL SEEVNKQKAL 780 EQTLQSRYGD LLSGYQSIHE QLEEHKRLLK LQEEAIEAEK CAKEAIEAEK RAKEAALEAE 840 NRAKEEAIEA ENRAKEALEA ETRAKEEEEA AARNRAAEEE NERKNHDIEE ESGQTTTVTD 900 EEAAGSKGDQ MDMDNADVAG ELVGPIPPLP DTRVDNNGAS VEQSTSNAQS GDSVTVNEGA 960 IDKVDLSKLD GQDNTSCSMD IDAGNQEEGK NVLPAAATSV DVGNTPVSSD QAVSNEGSDA 1020 VQAPVSSDQA VSNEGSDAVH APVSSDEAAS NEESGAVPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 792 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDNRHKKRKRK |
2 | 199 | 204 | KKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198485.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | N1QT21 | 0.0 | N1QT21_AEGTA; Cell division cycle 5-like protein | ||||
STRING | EMT02094 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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