PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02094
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 1059aa    MW: 118158 Da    PI: 4.7737
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02094genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.5e-13853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  + ++kqck rw+ +l
         EMT02094  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RQSAKQCKARWYEWL 53
                     78*****************************.************986 PP

2Myb_DNA-binding32.71.8e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
         EMT02094  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.478253IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-17556IPR009057Homeodomain-like
SMARTSM007171.2E-13655IPR001005SANT/Myb domain
CDDcd001674.14E-111053No hitNo description
PfamPF139213.9E-121070No hitNo description
SuperFamilySSF466892.84E-2033108IPR009057Homeodomain-like
PROSITE profilePS5129421.05354107IPR017930Myb domain
CDDcd116598.92E-3155106No hitNo description
Gene3DG3DSA:1.10.10.603.7E-1457104IPR009057Homeodomain-like
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118311.0E-59406654IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1059 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRQ SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHK KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT  240
TIEELEGRRR VDVEAQLRKQ DIAKNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP  300
QISDHELEEI AKMGNAGDPA LAEELGEGST ATRTLLANYS QTPRLGMTPL RTPQRTPGGK  360
GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KKEIQTPNPM ATPLASPGPG  420
VTPRIGLTPS RDGNSFGLTP KGTPFRDELH INEEVEMQDS AQLELRRQAE LRRGLRSGFA  480
SIPQPKNEYQ IVMPPITEEK EEAEERIEED MSDRLARERA EEQARQEALL RKRSKVLQRS  540
LPRPPAASVE ILRQSLIKGG ESRSTFVPPT SLEQADELIN EELLRLLEHD NAKYPLDEQT  600
QREKKKGSKR QTNGAAFVPE IEGFDEHELK EASSMVEEEI QYLRVAMGHE NESFEDFVKS  660
HDACQEDLMF FPANSSYGLA SVAGNADKIS ALQHEFEMVK KRMDDEAKKA SRLEQKIKLL  720
TQGYQARAAK LGSQIQDTFK QMNTAATELE CFQELQKQEQ MAGAYRVRNL SEEVNKQKAL  780
EQTLQSRYGD LLSGYQSIHE QLEEHKRLLK LQEEAIEAEK CAKEAIEAEK RAKEAALEAE  840
NRAKEEAIEA ENRAKEALEA ETRAKEEEEA AARNRAAEEE NERKNHDIEE ESGQTTTVTD  900
EEAAGSKGDQ MDMDNADVAG ELVGPIPPLP DTRVDNNGAS VEQSTSNAQS GDSVTVNEGA  960
IDKVDLSKLD GQDNTSCSMD IDAGNQEEGK NVLPAAATSV DVGNTPVSSD QAVSNEGSDA  1020
VQAPVSSDQA VSNEGSDAVH APVSSDEAAS NEESGAVPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027923792Cell division cycle 5-like protein
5xjc_L0.027923792Cell division cycle 5-like protein
5yzg_L0.027923792Cell division cycle 5-like protein
5z56_L0.027923792Cell division cycle 5-like protein
5z57_L0.027923792Cell division cycle 5-like protein
5z58_L0.027923792Cell division cycle 5-like protein
6ff4_L0.027923792Cell division cycle 5-like protein
6ff7_L0.027923792Cell division cycle 5-like protein
6icz_L0.027923792Cell division cycle 5-like protein
6id0_L0.027923792Cell division cycle 5-like protein
6id1_L0.027923792Cell division cycle 5-like protein
6qdv_O0.027923792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDNRHKKRKRK
2199204KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198485.10.0cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLN1QT210.0N1QT21_AEGTA; Cell division cycle 5-like protein
STRINGEMT020940.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]