PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 268aa MW: 29630.1 Da PI: 6.2599 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 109 | 152 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+vd+ ++G++ W++I r+++ gRt++++k++w++ EMT02062 109 RGNITPEEHLLIVDLQGRWGNR-WSKIVRHLP-GRTDNEIKNFWRT 152 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 35 | 9 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 85 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.472 | 89 | 103 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.75E-19 | 89 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.626 | 104 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-12 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-12 | 109 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-10 | 113 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-16 | 116 | 153 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MPPCRRLRSE PFLTPESRLE LLEQIRARRD AQIATGLPPD PLHPEEEKVE EDEEDFEEEG 60 DKPKEEDAGT LATRICRRSS RPSSIPGLNR TGKSCRLRWL NYLRPDVRRG NITPEEHLLI 120 VDLQGRWGNR WSKIVRHLPG RTDNEIKNFW RTKIQKKRRA GATASDSAGC QLLSSTAVTE 180 SQSSSSNSVV RPGGMPHYDV VAATTQPGGW GDHQLGYAVQ GGGVAACAGG MDAGVPPEFL 240 QAAAVAADNF WGLEEFWPTV PPSLHGDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-14 | 90 | 157 | 40 | 107 | B-MYB |
1gv2_A | 1e-14 | 90 | 157 | 37 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-14 | 90 | 157 | 91 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-14 | 90 | 157 | 91 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-14 | 90 | 157 | 60 | 127 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-14 | 90 | 157 | 37 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-14 | 90 | 157 | 37 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176337.1 | 1e-131 | myb-related protein 305-like | ||||
TrEMBL | R7W3C3 | 0.0 | R7W3C3_AEGTA; Transcription factor MYB21 | ||||
STRING | EMT02062 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 4e-41 | myb domain protein 21 |