PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT01865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 120aa MW: 12667.2 Da PI: 4.2967 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 2 | 42 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ede+lv +++ +G g W + +++ g++R++k+c++rw++yl EMT01865 2 EDEILVSYINDHGEGKWGSLPKRAGLNRCGKSCRLRWLNYL 42 9***************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.5E-4 | 1 | 44 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.039 | 1 | 46 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 2 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-8 | 2 | 42 | No hit | No description |
Pfam | PF00249 | 1.6E-11 | 2 | 42 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.63E-14 | 2 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MEDEILVSYI NDHGEGKWGS LPKRAGLNRC GKSCRLRWLN YLRPGIKRGN ISDDEEELIG 60 IELGFMMSPW SGGADGVGDQ HFGAPGAEAD GLEELLGLGV AGGGGDGHGG LGDLELAWLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP279637 | 3e-99 | KP279637.1 Aegilops tauschii myb10-D1e (myb10-D1) gene, myb10-D1e allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156360.1 | 4e-35 | transcription repressor MYB6-like | ||||
Swissprot | Q9FJA2 | 6e-26 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | N1QPQ4 | 4e-78 | N1QPQ4_AEGTA; Uncharacterized protein | ||||
STRING | EMT01865 | 7e-79 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 8e-28 | MYB family protein |