PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01225
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 402aa    MW: 43734.1 Da    PI: 8.4315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01225genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.3e-05310361453
               HHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIks 53 
                h+e+ErrRR riN  +   r++ P  +   +  +K++Ka+ L ++v+ +++
  EMT01225 310 VHSEAERRRRVRINAHLTPPRRMTPDtNQgLGWIQKMDKAALLARVVDQVRH 361
               59************************55477778999999999999998777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-7298368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.852306362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-7309370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.63E-6311364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEKIGGRSRG KGEGKVKKGG SGARRELTLI DAACGAVGCW IQDGIPFYYG EEGDAVEEEK  60
FTFFLVLAVS KSWMAVPCQP PQGRNELMAY DACDPTMDKA ALLARVVDQV KHLKRRASEA  120
AQLRPAVPPE AEEVSDEFCC TGDTDDDDRR LYIKASVSCD DRPDLVAGLI QALHGLRLLP  180
PSLSLLRLPR ADHCRMCSAA VVDLLQQLQP GRCINLTLTR DRGATPLSVK HHQKFTFFLV  240
LAVSRSWMAP PCQSPQGGNE LMAYDACDPT VSRGPAPLPR QASSAPPAGP PELSTTGSGR  300
TATEARALKV HSEAERRRRV RINAHLTPPR RMTPDTNQGL GWIQKMDKAA LLARVVDQVR  360
HVKRRATEAA QLTPAVPSET DEPDPGLPGH GLRHGTKTLS IL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-53HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191744.16e-59putative transcription factor bHLH107 isoform X1
TrEMBLR7VZU10.0R7VZU1_AEGTA; Putative transcription factor bHLH107
STRINGEMT012250.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-12bHLH family protein