PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT01172 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 389aa MW: 42423.2 Da PI: 6.2377 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 49.8 | 6.4e-16 | 92 | 203 | 1 | 112 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++c +av++gd+el++ L+ + as d p++Rla+ f+ ALa r+++ ++++++al+ ++t++ ++aa + f+e++ +l+++ taN EMT01172 92 LITLLYSCSTAVAKGDKELVNVGLEMICSGlASDDVgWPIHRLASSFADALALRMVQPWQGVCRALQLQKTTP--APATAAACRHFVEMCLFLRLTRTTAN 190 5789*********************9966536666448*****************************999996..7777889999**************** PP GRAS 100 qaIleavegeerv 112 I +a+ +e+ v EMT01172 191 YGIIDATRTERNV 203 ********99776 PP | |||||||
2 | GRAS | 113.8 | 2.3e-35 | 208 | 384 | 155 | 313 |
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkv 238 e l+ tg La+ Ae+l++ f+f+++ + + l++e L v++gE+l++ + lqlhrll ++ +++ + d++L+ + +lsPk+ EMT01172 208 DEFLSVTGALLAREAESLHIGFHFHPVKLQINQLLSIEPLGVRSGETLVIVSTLQLHRLLadefvevaarphdrkgkAQAHATMMRADALLRDLAKLSPKL 308 5668889*******************877777888***************************************9986666666689************** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetle 313 +vv+e e++hn ++F +r+ +al+yy alfd+le+++p+ er+ vEr ll +ei+++v ga+rrerhe+++ EMT01172 309 MVVTEPEVNHN-GEFTARVENALNYYGALFDALEESVPTRGsaMERADVERCLLLQEIRDIVPYDGAQRRERHERMG 384 **********6.57**********************998765799*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.564 | 66 | 389 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-13 | 92 | 203 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.8E-33 | 208 | 384 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MGSIMNPENR GQETTGPVYA PTPLRTTWSV DLGNGLNGTF VHSNINGTTR LLVPEVRSAA 60 APATTSPTAP PTTGSPTAPA SQDQYEQSAI DLITLLYSCS TAVAKGDKEL VNVGLEMICS 120 GLASDDVGWP IHRLASSFAD ALALRMVQPW QGVCRALQLQ KTTPAPATAA ACRHFVEMCL 180 FLRLTRTTAN YGIIDATRTE RNVVLHEDEF LSVTGALLAR EAESLHIGFH FHPVKLQINQ 240 LLSIEPLGVR SGETLVIVST LQLHRLLADE FVEVAARPHD RKGKAQAHAT MMRADALLRD 300 LAKLSPKLMV VTEPEVNHNG EFTARVENAL NYYGALFDAL EESVPTRGSA MERADVERCL 360 LLQEIRDIVP YDGAQRRERH ERMGSGRDG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171690.1 | 1e-169 | scarecrow-like protein 3 | ||||
TrEMBL | R7W274 | 0.0 | R7W274_AEGTA; Uncharacterized protein | ||||
STRING | EMT01172 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13716 | 13 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-17 | scarecrow-like 3 |