PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT01032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 10048.2 Da PI: 10.1944 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.9e-08 | 25 | 71 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ +++ +a + + + +W+ +ar+mg +++ +++ ++ EMT01032 25 AWTQRQNKQFECALAVYDRDtphRWHDVARYMGGAKSADELRRHFER 71 8*****************99*************889********965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.5E-5 | 22 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-5 | 24 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.43E-9 | 25 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.41E-5 | 25 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MGYFQTKGVH QCRRRPAPKG SATTAWTQRQ NKQFECALAV YDRDTPHRWH DVARYMGGAK 60 SADELRRHFE RLVHDVAQIE SSGRYAG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184921 | 1e-48 | KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441575.2 | 1e-30 | protein RADIALIS-like 3 isoform X1 | ||||
Refseq | XP_021303965.1 | 1e-30 | protein RADIALIS-like 3 isoform X2 | ||||
Swissprot | Q6NNN0 | 8e-20 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | N1QTU7 | 3e-59 | N1QTU7_AEGTA; Uncharacterized protein | ||||
STRING | EMT01032 | 4e-60 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-21 | RAD-like 6 |