PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01027
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WOX
Protein Properties Length: 408aa    MW: 43127.7 Da    PI: 8.5783
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01027genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.38.2e-1653112256
               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
               ++R+++ +eq+++Le  F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k
  EMT01027  53 KPRWNPRPEQIRILEGIFNSgVVNPPRDEIRRIRLRLqeygHVADANVFYWFQNRKSRTK 112
               89*****************99*************************************99 PP
2Wus_type_Homeobox105.92.5e-3452114264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG++ d+NVfyWFQNrk+R ++k
           EMT01027  52 TKPRWNPRPEQIRILEGIFNSGVVNPPRDEIRRIRLRLQEYGHVADANVFYWFQNRKSRTKNK 114
                        689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.83149114IPR001356Homeobox domain
SuperFamilySSF466897.01E-1150118IPR009057Homeodomain-like
SMARTSM003891.9E-451118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-552113IPR009057Homeodomain-like
PfamPF000462.1E-1353112IPR001356Homeobox domain
CDDcd000868.33E-653114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MASSNKHWPS MFRSNPAACD FHHQPDMSNT HTRPSLISSG LDQETTRSPG ETKPRWNPRP  60
EQIRILEGIF NSGVVNPPRD EIRRIRLRLQ EYGHVADANV FYWFQNRKSR TKNKLRAAAA  120
AAAAQGQQPT GGRAAVMRAS LAVRTPALAP VTPPRRFLAP CGTLQAPTSS SSSSSDRSSG  180
SSRSVTMKTT AMASSAVASL SQPMLPLSTA AIDLFAPAPP PLTPSPGLSA CQLYYQLQNH  240
PMTSMPTPTP VRELVTSTPE PAPLLPQWPP QSQCQYLPAT ELGGFLGSHG HTHPTAVSPG  300
ALLLSGLCTD SVLGQHEIVD DMSCSKLGLG VGGPYHFNVP ADPPSDAVSA VIKDDEKARL  360
GFLHHYGLGA TAGADVSATA LPCTPPIGNA AASSAFTDQL QGTLPCQG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902421e-73AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169224.10.0WUSCHEL-related homeobox 12-like
SwissprotA3B6V01e-84WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLN1QTU60.0N1QTU6_AEGTA; WUSCHEL-related homeobox 12
STRINGEMT010270.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-45homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]