PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT00493 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 149aa MW: 17394.8 Da PI: 10.7148 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.8e-08 | 69 | 115 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 WT eE + lvd+v +G g W++ ++ Rt+ ++k++w+++ EMT00493 69 HWTSEEVKELVDGVSVYGVGPWTKLKNERFpiSIRTAVHLKDKWRNL 115 6***********************9876545*99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.35 | 62 | 120 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-13 | 64 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0024 | 66 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-10 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 5.17E-17 | 70 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDFQALLEGP HDLDRWLKDY IAKSGWRHGS RVRSARERGT WSINIEPCSR DLRSTSEGQK 60 HGSRRNNDHW TSEEVKELVD GVSVYGVGPW TKLKNERFPI SIRTAVHLKD KWRNLVKAFT 120 GNVKRRISPR LDKDCVEKIK RLAADYPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189262.1 | 2e-68 | uncharacterized protein LOC109774912 | ||||
TrEMBL | N1QS63 | 1e-105 | N1QS63_AEGTA; Uncharacterized protein | ||||
STRING | EMT00493 | 1e-106 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 1e-13 | TRF-like 3 |