PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT00423
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 268aa    MW: 28974.3 Da    PI: 5.6115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT00423genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.3e-121462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd +l   v+++ +  +W t +++ g++R++k+c++rw++yl
         EMT00423 14 RGAWSREEDAILTGFVQRFANAgNWMTLPHKAGLNRCGKSCRLRWLNYL 62
                     89******************999************************97 PP

2Myb_DNA-binding47.15.3e-1569111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      gr+T eEd l++ + +  G++ W+ Ia++++ gRt++++k++w++
         EMT00423  69 GRFTDEEDSLILSLYADIGSK-WSVIAAKLP-GRTDNDVKNHWNT 111
                      8********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.58962IPR017877Myb-like domain
SuperFamilySSF466891.84E-2511109IPR009057Homeodomain-like
SMARTSM007171.0E-61364IPR001005SANT/Myb domain
PfamPF002496.5E-101462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-191569IPR009057Homeodomain-like
CDDcd001675.74E-51662No hitNo description
PROSITE profilePS5129421.69763117IPR017930Myb domain
SMARTSM007174.7E-1367115IPR001005SANT/Myb domain
PfamPF002493.9E-1369111IPR001005SANT/Myb domain
CDDcd001671.17E-1070113No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2270116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRSPCCDRR SVKRGAWSRE EDAILTGFVQ RFANAGNWMT LPHKAGLNRC GKSCRLRWLN  60
YLRPALRHGR FTDEEDSLIL SLYADIGSKW SVIAAKLPGR TDNDVKNHWN TKLKKRHLLA  120
MAPSPTPPTA ATDSPSASDS DESSLPPPPL DEAAVATADH GGELTHRSEE LYAELKGLIQ  180
QQPTNGDVRS SSSSSLPLTP TAGASSAGVT STGWPVDDRE FLPESSGSSM VVDLDDPCAA  240
HAFGATTFQD LLASSYDEII GTEGLLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-42HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177100.10.0transcription factor RAX2-like
TrEMBLN1QPS80.0N1QPS8_AEGTA; Transcription factor RAX2
STRINGEMT004230.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-59MYB family protein