PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT00423 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 28974.3 Da PI: 5.6115 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.3e-12 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l v+++ + +W t +++ g++R++k+c++rw++yl EMT00423 14 RGAWSREEDAILTGFVQRFANAgNWMTLPHKAGLNRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.3e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr+T eEd l++ + + G++ W+ Ia++++ gRt++++k++w++ EMT00423 69 GRFTDEEDSLILSLYADIGSK-WSVIAAKLP-GRTDNDVKNHWNT 111 8********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.58 | 9 | 62 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.84E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-6 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-10 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-19 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.74E-5 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.697 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGRSPCCDRR SVKRGAWSRE EDAILTGFVQ RFANAGNWMT LPHKAGLNRC GKSCRLRWLN 60 YLRPALRHGR FTDEEDSLIL SLYADIGSKW SVIAAKLPGR TDNDVKNHWN TKLKKRHLLA 120 MAPSPTPPTA ATDSPSASDS DESSLPPPPL DEAAVATADH GGELTHRSEE LYAELKGLIQ 180 QQPTNGDVRS SSSSSLPLTP TAGASSAGVT STGWPVDDRE FLPESSGSSM VVDLDDPCAA 240 HAFGATTFQD LLASSYDEII GTEGLLYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-42 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177100.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | N1QPS8 | 0.0 | N1QPS8_AEGTA; Transcription factor RAX2 | ||||
STRING | EMT00423 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 3e-59 | MYB family protein |