PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011402353.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 350aa    MW: 36466.9 Da    PI: 7.4308
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011402353.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06104125426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     +lC ++ r G C +Gd C++ H+
  XP_011402353.1 104 VLCVDYTR-GRCLRGDACRYLHP 125
                     699*****.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.46115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9112249IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-42348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4556289IPR000571Zinc finger, CCCH-type
SMARTSM003560.00176388IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5103125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4105124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCTRGAACKY SHSVDHIIAV NSEEKGICFD FLKGLCNRGL MCRFSHDLTN LQAPQESGNG  60
RRRFAPICYD FVKNQCTRGD ACRYSHDYAS ILYGPRGAGK QLNVLCVDYT RGRCLRGDAC  120
RYLHPAPAAY GGPASLEAVP AVPAPGFDPG YDLVMAQLQG LSLAGQEAAP SGRHPQAGLY  180
EAAVLQSMLL QQRFGAAGPE ARSGGFQGTA HAAPGAAAFA QGGPGASLPS GFLSSTSRGG  240
YTAPQAHRIK QLPRAMEQLL AGEAGEDLSP TIPAGWYDPT PEQRAGASPA PEPAAPDLAP  300
IFTRAAEDGA ARSGGATPVD GARSTTQRGG SGDDRAGLEL LQSIWAIHGA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011402353.10.0Zinc finger CCCH domain-containing protein 7
TrEMBLA0A087SU960.0A0A087SU96_AUXPR; Zinc finger CCCH domain-containing protein 7
STRINGA0A087SU960.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.13e-06C3H family protein