PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011402245.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family E2F/DP
Protein Properties Length: 353aa    MW: 37627.2 Da    PI: 4.6425
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011402245.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.52.5e-19105180670
         E2F_TDP   6 Lrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwk 70 
                     L+ ++ +   ++ek+ + g++t+neva++Lv++              d+kn+rRR+YD+lNVLea + i+k + +++rw 
  XP_011402245.1 105 LKEYSLM---VCEKVLArGTTTYNEVADSLVQDfmagnvrgacdgeiDEKNIRRRVYDALNVLEACGAIAK-DSKSVRWV 180
                     5555555...****9888*****************************************************.88889995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-2998184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.3E-18100181IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.8E-17104180IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.71E-14104180IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEEAADEAI VACLARIEAA SARLLQLECR AAALHSQPSP TSAEKTQSPS EGKLELTSGS  60
LSAQEASSST PPLSKRKRIP TPRKAGAAES SDLASSSSKS VGVGLKEYSL MVCEKVLARG  120
TTTYNEVADS LVQDFMAGNV RGACDGEIDE KNIRRRVYDA LNVLEACGAI AKDSKSVRWV  180
SWPRGPPAGP AASSATGVAE QQQECADQQA AEVRERMADL KVGRGVQSTI LYGEPDRRLA  240
HIELSSTPPG TLPYLLLDDE MVMQRMGLGT SLPDLPEEGY GRGPQRQLDQ PLASPWLRGV  300
PKAEAGDETA SPQAPPLESL DLEPLAPQAV LEAPWYYARG LEERAFGHPP PGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-24102183990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011402245.10.0Transcription factor Dp
TrEMBLA0A087STY80.0A0A087STY8_AUXPR; Transcription factor Dp
STRINGA0A087STY80.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.17e-20Transcription factor DP