PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011402147.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 1557aa    MW: 170476 Da    PI: 9.1967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011402147.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10524567348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT+eE + ++ a++ +G + W++  r ++  +tl q+k+++q+y+
   XP_011402147.1 524 YWTQEEKDAFYAAFQGWGRD-WAALRRAVP-AKTLTQIKNYYQNYR 567
                      6*****************77.*********.9*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.067230282IPR017884SANT domain
SMARTSM0071744231280IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-8233280IPR009057Homeodomain-like
PROSITE profilePS512949.47517571IPR017930Myb domain
SuperFamilySSF466891.05E-9519571IPR009057Homeodomain-like
SMARTSM007176.0E-7521569IPR001005SANT/Myb domain
PfamPF002491.3E-7524567IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-6525567IPR009057Homeodomain-like
CDDcd001677.25E-6525566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1557 aa     Download sequence    Send to blast
MLRTLAHMQR FAAFGPEGEF LRERRSPPGS GTPGYDKRAR WESSRALSDR HAKFDAWEGP  60
DSRGFRSPPT YDSSLYERVL GASSPPAHAS SASLLARIQD LDAELAGVGA QLLDEAAGAP  120
HGLAVLQDVA QLPCFARNVA AFDRVQSAMS VVLRAELSSQ LKTQVLASIQ YRTRDWEERL  180
ALARLVAIEG IKGACRLPAC ARPSARAARW AWRDDNRRVA DPVAELEREG WERPWSDAEV  240
RAFMDGFLVH HKDFARIAAT CLPGRRVTEV VALYYSLQRT DVFAATRRKY QLRKRREQTE  300
VNLRARAATF MGMGVGGEGA AKRGADRAAG GPAPGLARTV SRTESSGLTR TKSKGSGGGA  360
GQQASPLAPP SFQATNPEIP AVAECLGETS SASVQLFWEE NAERLALDVL ALDGARALDT  420
SGALAALGPL EDGALGSPPA PVAPRDGQQA TRAASGSPWE GPSPVDGVAP PPAPEAPDAA  480
PAPGEAEAGD AAGAAPRGPA PATGALPAHS AAASSNGKRA QTSYWTQEEK DAFYAAFQGW  540
GRDWAALRRA VPAKTLTQIK NYYQNYRSKL GLDRLGQVPD DGAGVGPVAG PARKRKGGQG  600
GGPEWVGGAG SAVWLADCWA RAPTDLGQPL VPVPCRVAHC LDMTTATHLS PXXXXXXXXX  660
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  720
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  780
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  840
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  900
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  960
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  1020
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  1080
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  1140
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  1200
XXXXXXXXXX XXXXXXXXXX XXXXXXLCPA RPRRAGGPPP VLFAPGALTS AGNTPRAGAG  1260
TGAGAGAAGP ALASQLMHLG MLSGMATPAA VLVLQQQQAA MQHAVASAAA AAAAAGTKVP  1320
GASFQELPRE EAAPPAAGPP VERDAAPTSR ELRTVGPLPE PSPAQQGEAG PSVGRAGDSE  1380
PKPTYDILAG PSSTDSGKED AQGDAQVLSA VMEAMLAVAC KALPGGAGEP SPVPPAGTSG  1440
RALQKAAERE ALLAAKRAEI DAARLAECTF SPALVGGPRR PAALAAAPPP RGLGRHLELQ  1500
RLAAKRRAEA EERAAQVFRL APRAPAHPFT IPQPFRLEGL ARQARRRAEG EESHQLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011402147.10.0hypothetical protein F751_3715
TrEMBLA0A087STP40.0A0A087STP4_AUXPR; Uncharacterized protein
STRINGA0A087STP40.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28831010