PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011402112.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 973aa    MW: 105970 Da    PI: 5.4257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011402112.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-0775111341
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                       W ++E+ llv++v+++G g+W+++ +++g  R + + +
   XP_011402112.1  75 EWGADEEILLVEGVELYGLGNWEAVGEHVG--RDPGEAR 111
                      7****************************8..6555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002912.5E-81257IPR000433Zinc finger, ZZ-type
CDDcd023353.99E-241664No hitNo description
PROSITE profilePS5013510.2391659IPR000433Zinc finger, ZZ-type
SuperFamilySSF578506.71E-131679No hitNo description
PfamPF005697.6E-71648IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135701845IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.63E-768118IPR009057Homeodomain-like
PROSITE profilePS5129313.80671122IPR017884SANT domain
SMARTSM007173.5E-572120IPR001005SANT/Myb domain
CDDcd001677.04E-675117No hitNo description
Gene3DG3DSA:1.10.10.604.6E-475116IPR009057Homeodomain-like
PfamPF002494.3E-675114IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-8460541IPR009057Homeodomain-like
Gene3DG3DSA:3.10.180.101.9E-26546727IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
SuperFamilySSF545933.32E-73558960IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
TIGRFAMsTIGR012631.0E-92567971IPR0059564-hydroxyphenylpyruvate dioxygenase
CDDcd083421.33E-31568727No hitNo description
Gene3DG3DSA:3.10.180.103.4E-62737961IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CDDcd072504.14E-69738915No hitNo description
PfamPF009034.5E-8741897IPR004360Glyoxalase/fosfomycin resistance/dioxygenase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009072Biological Processaromatic amino acid family metabolic process
GO:0010189Biological Processvitamin E biosynthetic process
GO:0010236Biological Processplastoquinone biosynthetic process
GO:0016117Biological Processcarotenoid biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003868Molecular Function4-hydroxyphenylpyruvate dioxygenase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MAPPVPLGTR TGRGLYHCDY CHKDLSNALH IRCAVCPDFD LCLDCFSVGA AITPHSSDHA  60
YKVVGNLSFP IYHPEWGADE EILLVEGVEL YGLGNWEAVG EHVGRDPGEA RAHYMSVYVE  120
TACFPDPQPS PAMAGVDIQA LIDAHRSTTL NKMASARIAL ASPAATPRVK SESTPGAAAW  180
DAANGGAMGP GHSPQRAADS RAPSSAERAP LESVRKLEPE ANILQDPLGA GVAGTPAAAS  240
PAEIGAKVAL AEAQQTGYNL KRNEFEQEYD HEAECIISEM EFREEDSEEV VAQKLELIAI  300
YNRRLDERDQ RRAFILDRGL LNVKRQAAMD RRRSAAERAM AGQLRAFARY LPQAQYEALA  360
DGMLAEARLC ARIAELQEYR ALGLRTFEEV DELEASGDRP RRKENAPPSQ AARMRLNRVP  420
IDEARLQEHL LSGLGFAHAA MSLHQKRTTV EEGRGTSGLA AWRGKRGTLL DITALPDAEV  480
LLQQERHLCA SERYLPAQYL AIKAAVLEVQ ERRGVVTPGD VTALPFKVDV QRMLRLYDFF  540
SGQARKLVGA KGFQRHNPLT DKFPIHRFHH FEFYCGDATN TSRRFGLGLG LSQVAKSDQG  600
TGNQKFASYV MRSNQLIFTF TAPYNGAGGE ASGPDAGSPV PWYDVDAAHT FNRNHGLGVR  660
AVGIVVEDAA EAFRISTANG GIPVQPPTRL ADARGSLTVS EIVLYGDVVL RFLSGDYSGS  720
YLPGYEEEAR PSPRCFGIRR ADHAVGNVPD LGAQVDYLTR ALGLHDFAEF TAEDVGTIDS  780
GLNSMVLASN NEMVLLPVNE PTRGTRRKSQ IQTFLEQNGG PGLQHLALKT DDVFATLRAM  840
RAVGDAGGFE FMPRPSDAYY RDLPSKVGDA LTPEQLSEAE ELGLLVDRDD QGVLLQIFTK  900
PLGDRPTVFV EIIQRLCHIQ PSEETLRAAR ATAQACPLAA NPDEVGGCGG FGKGNFSELF  960
KSIEVYETDL GIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sqd_A1e-14554697044174-hydroxyphenylpyruvate dioxygenase
1tfz_A1e-14554697044174-hydroxyphenylpyruvate dioxygenase
1tg5_A1e-14554697044174-hydroxyphenylpyruvate dioxygenase
5xgk_B1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5xgk_C1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5xgk_D1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5ywg_A1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5ywg_B1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5ywh_A1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5ywh_B1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5ywk_A1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5ywk_B1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5yy7_A1e-145546970254384-hydroxyphenylpyruvate dioxygenase
5yy7_B1e-145546970254384-hydroxyphenylpyruvate dioxygenase
6isd_A1e-145546970254384-hydroxyphenylpyruvate dioxygenase
6isd_B1e-145546970254384-hydroxyphenylpyruvate dioxygenase
6j63_A1e-145546970254384-hydroxyphenylpyruvate dioxygenase
6j63_B1e-145546970254384-hydroxyphenylpyruvate dioxygenase
6j63_C1e-145546970254384-hydroxyphenylpyruvate dioxygenase
6j63_D1e-145546970254384-hydroxyphenylpyruvate dioxygenase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398402RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011402112.10.04-hydroxyphenylpyruvate dioxygenase
TrEMBLA0A087STK90.0A0A087STK9_AUXPR; 4-hydroxyphenylpyruvate dioxygenase
STRINGA0A087STK90.0(Auxenochlorella protothecoides)