PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011401669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | SBP | ||||||||
Protein Properties | Length: 89aa MW: 9993.11 Da PI: 11.7476 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 56.9 | 5.5e-18 | 5 | 50 | 32 | 77 |
-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 32 vvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +v +g+ rfCqqC+rf els fD e+rsCr+rL +h rrr+++ XP_011401669.1 5 SVPFRGVDSRFCQQCGRFQELSAFDGEHRSCRERLLRHAGRRRRQS 50 5778999************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 16.016 | 1 | 49 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-11 | 2 | 36 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-16 | 2 | 48 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.58E-15 | 5 | 50 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MRSLSVPFRG VDSRFCQQCG RFQELSAFDG EHRSCRERLL RHAGRRRRQS FLNSISNRAL 60 GRSSDEDSHG TPGTSKSGWW PGVVPVSAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011401669.1 | 9e-59 | Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A087SSC9 | 2e-57 | A0A087SSC9_AUXPR; Squamosa promoter-binding-like protein 9 | ||||
STRING | A0A087SSC9 | 4e-58 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 2e-07 | squamosa promoter binding protein-like 15 |
Link Out ? help Back to Top | |
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Entrez Gene | 23617783 |