PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011401432.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | C3H | ||||||||
Protein Properties | Length: 127aa MW: 14144.1 Da PI: 9.5899 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.8e-06 | 8 | 30 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C f+ + GtC+ G+ C+F H++ XP_011401432.1 8 QDCIFYIQ-GTCNKGALCPFRHDQ 30 68**9999.***********9986 PP | |||||||
2 | zf-CCCH | 19.1 | 2.2e-06 | 43 | 65 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C ff++ G+C+ G+ C+F H++ XP_011401432.1 43 QDCIFFLQ-GWCSKGSLCPFRHDQ 65 58******.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.399 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 4 | 30 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 5 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.29 | 39 | 65 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 41 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-4 | 43 | 65 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MLDSRKNQDC IFYIQGTCNK GALCPFRHDQ SKVQQHRAQQ AQQDCIFFLQ GWCSKGSLCP 60 FRHDQACRGV GGGVSAGSYT TMHSVVMAPK SRAGHASHSS VRPLAADRPS QCHNFHPSIP 120 CRQRLMR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011401432.1 | 1e-90 | hypothetical protein F751_5330 | ||||
TrEMBL | A0A087SRR3 | 3e-89 | A0A087SRR3_AUXPR; Uncharacterized protein | ||||
STRING | A0A087SRR3 | 4e-90 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5781 | 7 | 7 |
Link Out ? help Back to Top | |
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Entrez Gene | 23616721 |