PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011401306.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | SBP | ||||||||
Protein Properties | Length: 207aa MW: 22042.2 Da PI: 10.6791 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 82.5 | 5.5e-26 | 18 | 92 | 2 | 76 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cq++gC+++ls++ y++r +vC+ h k+p+ +g+e r+Cq+C+ h ls++D ++rsCrr+L++hn+rrr+ XP_011401306.1 18 CQADGCSVNLSKLPFYYQRNHVCTEHNKCPSFRRQGEEVRYCQRCGVAHPLSDYDGDRRSCRRQLERHNARRRRL 92 *************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 22.512 | 15 | 92 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-19 | 17 | 79 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.14E-24 | 17 | 94 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.2E-25 | 18 | 91 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGRGSRGPRP RLFAKGKCQA DGCSVNLSKL PFYYQRNHVC TEHNKCPSFR RQGEEVRYCQ 60 RCGVAHPLSD YDGDRRSCRR QLERHNARRR RLALAAAATP RSRSPAGERW VAPSEPGPLP 120 LAPVVAPSAS YAVPALSPAA SAAAAGPVDE RVCRGDDPFA GPAAAWLAAA TTPPPAALGP 180 LRPSRRPTGP PPPACLLMVP LAAVSVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 1e-14 | 17 | 91 | 5 | 79 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011401306.1 | 1e-144 | Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | A0A087SRD8 | 1e-143 | A0A087SRD8_AUXPR; Squamosa promoter-binding-like protein 11 | ||||
STRING | A0A087SRD8 | 1e-144 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27360.4 | 7e-16 | squamosa promoter-like 11 |
Link Out ? help Back to Top | |
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Entrez Gene | 23612962 |