PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400834.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family SBP
Protein Properties Length: 611aa    MW: 63065.6 Da    PI: 7.6782
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400834.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP89.92.7e-2881156176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +Cq++gC++ l+++  yh+r ++Ce h kap+ l +g+  rfCq+C+  h l efD +++sCr++L+khn+rrrk+
  XP_011400834.1  81 VCQADGCHKPLANLTFYHQRNRICEEHIKAPSFLKDGELLRFCQRCGVSHPLAEFDGQRKSCRKQLEKHNARRRKS 156
                     6*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-2378143IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.10279156IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-2581158IPR004333Transcription factor, SBP-box
PfamPF031101.7E-2782155IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MADDVPPPGL PERLSGATAW DPADWAWDSV RMVATPIATP VTKPCCATAS APRVQRQPAR  60
RPGRPSRPAP APARKPVREN VCQADGCHKP LANLTFYHQR NRICEEHIKA PSFLKDGELL  120
RFCQRCGVSH PLAEFDGQRK SCRKQLEKHN ARRRKSGASP SAPIGTPTMP ASGSDNGGCL  180
PGSSGAPTKI MPEQAWAGLD LANPSSGWGW APGTSTPPPS SSSLSQPWLA GGESCASLSE  240
SRSDGACTGS APDALVEELS GWLTQQLADS PLFGATPEQL PPDLADQLAA WCAPPGSGLA  300
SLEAYLRPGC LHLTVQAVVQ GTPRCDEDAL GAVLAAMTGR TVHLDIPAPT LPGLLHVDVQ  360
KGPYLAPPGR GSRCLVVDSP AVAAELTAWV STAAVQGDAQ CMLDALGLVY EHVGGRGKIV  420
LGWGLWNSSP ASSSLPGPRD GTDRHGKPSP VPLSVYHLAA AAGEESTAER LVEALLEGGV  480
RPPAASQLPP GHRASDFAAR RGHHALAARL RALEGEAEGR HALPPSPKLH PAPHRATCCA  540
LGPVGAVPAE PALALGSFAR AGSGEPVAPD TPKRCCCKGS CPCALRTCGS CCSGGGLGCG  600
LRSGDCPCCS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-16811551084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1569574DTPKRC
2570574TPKRC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400834.10.0Squamosa promoter-binding-like protein 9
TrEMBLA0A087SQ410.0A0A087SQ41_AUXPR; Squamosa promoter-binding-like protein 9
STRINGA0A087SQ410.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-20squamosa promoter binding protein-like 8