PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011400834.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 611aa MW: 63065.6 Da PI: 7.6782 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 89.9 | 2.7e-28 | 81 | 156 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cq++gC++ l+++ yh+r ++Ce h kap+ l +g+ rfCq+C+ h l efD +++sCr++L+khn+rrrk+ XP_011400834.1 81 VCQADGCHKPLANLTFYHQRNRICEEHIKAPSFLKDGELLRFCQRCGVSHPLAEFDGQRKSCRKQLEKHNARRRKS 156 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.6E-23 | 78 | 143 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.102 | 79 | 156 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.92E-25 | 81 | 158 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-27 | 82 | 155 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 611 aa Download sequence Send to blast |
MADDVPPPGL PERLSGATAW DPADWAWDSV RMVATPIATP VTKPCCATAS APRVQRQPAR 60 RPGRPSRPAP APARKPVREN VCQADGCHKP LANLTFYHQR NRICEEHIKA PSFLKDGELL 120 RFCQRCGVSH PLAEFDGQRK SCRKQLEKHN ARRRKSGASP SAPIGTPTMP ASGSDNGGCL 180 PGSSGAPTKI MPEQAWAGLD LANPSSGWGW APGTSTPPPS SSSLSQPWLA GGESCASLSE 240 SRSDGACTGS APDALVEELS GWLTQQLADS PLFGATPEQL PPDLADQLAA WCAPPGSGLA 300 SLEAYLRPGC LHLTVQAVVQ GTPRCDEDAL GAVLAAMTGR TVHLDIPAPT LPGLLHVDVQ 360 KGPYLAPPGR GSRCLVVDSP AVAAELTAWV STAAVQGDAQ CMLDALGLVY EHVGGRGKIV 420 LGWGLWNSSP ASSSLPGPRD GTDRHGKPSP VPLSVYHLAA AAGEESTAER LVEALLEGGV 480 RPPAASQLPP GHRASDFAAR RGHHALAARL RALEGEAEGR HALPPSPKLH PAPHRATCCA 540 LGPVGAVPAE PALALGSFAR AGSGEPVAPD TPKRCCCKGS CPCALRTCGS CCSGGGLGCG 600 LRSGDCPCCS G |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-16 | 81 | 155 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 569 | 574 | DTPKRC |
2 | 570 | 574 | TPKRC |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00603 | PBM | Transfer from AT2G47070 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011400834.1 | 0.0 | Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A087SQ41 | 0.0 | A0A087SQ41_AUXPR; Squamosa promoter-binding-like protein 9 | ||||
STRING | A0A087SQ41 | 0.0 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G02065.1 | 8e-20 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 23616801 |