PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400732.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 527aa    MW: 51612.9 Da    PI: 4.8534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400732.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-071046340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     +W  +E  ++ +a++++G++ +++++r +g gR+++qc
   XP_011400732.1 10 AWASDEARRFFRAFHKYGTE-FDKVSRAVGSGRSPEQC 46
                     699*****************.***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002494.2E-61047IPR001005SANT/Myb domain
SuperFamilySSF466894.68E-51153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSNSAKPLVA WASDEARRFF RAFHKYGTEF DKVSRAVGSG RSPEQCEALH RQHQAFLSLD  60
KKFQSEIVFI AMTEDSDGKD GRERSSGAGN DASDPGVGSE ATPAPSSSGQ KATGAASGSN  120
ARGGDADADS VLRASEAGSG AAQDGAPQQR TLASTRKTVN VEGRAPGAAP SAAPSVSEAS  180
NLAPAPAVPG TKPPYYVLGA TPQSGPGLPA AALCPAPGAG LAGGAPALSA PGTAAPGPPP  240
HPPPPGSTAS VRPQAAAAAL LSELTMAMHK KEALVAQLNL MNDEAAAGVH TDSAGGAQNP  300
GFVRAFASVI VQLKAVSDRI FEKLQELRDD GGPGGAGPDA YGPAPRGDDG GGEAQGPALS  360
PADLAPEALA AASLEAAERV VEACRGQLAG GARRSGQATG EGGEDDAAGG GGDEAPAGGG  420
TRAGAGGDAG GDLAAGPSTG AEEPASPDAA AAAAAQRSRG GVDWGSASGR RLTRLIQSCV  480
QTLLLLQRGT TAPVPMAALA AALDVAIAGV RPHAPANEGL LTEGIPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400732.10.0hypothetical protein F751_2736
TrEMBLA0A087SPU10.0A0A087SPU1_AUXPR; Uncharacterized protein
STRINGA0A087SPU10.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP156722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-06DNA binding