PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400517.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C2H2
Protein Properties Length: 271aa    MW: 30368 Da    PI: 6.5263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400517.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097169193123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C++C+k + + ++L  H+++  H
  XP_011400517.1 169 FFCEICNKQYQTAMQLDEHLSSydH 193
                     67*****************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004437.6E-870117IPR000467G-patch domain
PROSITE profilePS5017413.99872119IPR000467G-patch domain
PfamPF015852.2E-1074115IPR000467G-patch domain
SuperFamilySSF576676.15E-6167200No hitNo description
PfamPF121717.2E-6169190IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501578.746169198IPR007087Zinc finger, C2H2
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MQGGVPAVVD TRLQAGRGED FSAARKRREI DELAELANLD DDDFRLPMDH RIEDGMDWSA  60
TQRISLAEPL PAHNLGYRLL ERMGWRGGGL GARGQGRAEP IPLEAGDNGV RAGLGRGEVD  120
SQYTSVSSRR ALEVEMQADE DEGRRIRREA ESERVQLIRE EVVDILRTFF CEICNKQYQT  180
AMQLDEHLSS YDHHHRKRMA ETHAMLAARG KKDRDRRRRK EADRELAALT EHLPAEPPPA  240
PTPGLSFKAK GALGRKALPK KAVFGPDSDS D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RRRRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400517.10.0G patch domain-containing protein 8
TrEMBLA0A087S9S80.0A0A087S9S8_AUXPR; G patch domain-containing protein 8
STRINGA0A087S9S80.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP564266