PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400306.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 381aa    MW: 42283.5 Da    PI: 9.5114
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400306.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11140181246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grWT+eEd +l+  v+++G+  W + a+    gR + +c++rw+ 
   XP_011400306.1 140 GRWTKEEDAKLLAFVEEHGKS-WVK-AEAAL-GRMAVSCRDRWRE 181
                      8******************88.***.55555.8**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.896134187IPR017930Myb domain
SuperFamilySSF466891.15E-10134183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-12137181IPR009057Homeodomain-like
SMARTSM007172.1E-8138185IPR001005SANT/Myb domain
CDDcd001671.66E-7141182No hitNo description
PfamPF139211.4E-11142201No hitNo description
PROSITE profilePS500906.237185283IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-9186208IPR009057Homeodomain-like
SMARTSM007171.1E-10189285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-9257288IPR009057Homeodomain-like
SuperFamilySSF466891.56E-9263347IPR009057Homeodomain-like
PROSITE profilePS500906.295285338IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
METSSQAGSP SEPPKKRRKG TPVRVVDKEA VPSPASVPKA AGTQPLREET PSQGVSVMPL  60
AEVPGDAALK WRDSVRRRDV KAGPFTQAEK DTIRQALAKW AGEHGHSQTD FDWVFNPQAS  120
RSGLWKAVGA YLPHRTIKAG RWTKEEDAKL LAFVEEHGKS WVKAEAALGR MAVSCRDRWR  180
EIRLGSDKKS GPWSADEIAR LRKAIADYEE ARQSTESAAS AQKLSYSHDS NGGADSPADE  240
EEGVGAGLGS RRIILDDIDW GIISDQVGTR SNIQCLDKWY RQLSPSMVTR GEWGTGDDRR  300
LMKSLWLSGA CKEWEVDWGA LVKGRSATQA KRRWRLMARV IPEHREKDFW EQVDWLVDTY  360
LPALKEGDLR TPGSATKTAA A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11418KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400306.10.0DNA-binding protein REB1
TrEMBLA0A087SNN50.0A0A087SNN5_AUXPR; DNA-binding protein REB1
STRINGA0A087SNN50.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.13e-29MYB_related family protein