PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400265.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family bHLH
Protein Properties Length: 336aa    MW: 36248.6 Da    PI: 4.9168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400265.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12117175555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkas........kapskKlsKaeiLekAveYIksLq 55 
                     h+ +E++RRdriNs ++eLr+l+P++          +++ +  K  +L  +++ +++Lq
  XP_011400265.1 117 HSTVEKQRRDRINSLIDELRDLVPPQAgcgtgeaaEGSDSRRPKHVVLADTIQLVRDLQ 175
                     999**********************777******9999999************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.633112174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-11116180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-11117178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-10117178No hitNo description
SMARTSM003536.7E-9118180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.41E-9251318No hitNo description
Gene3DG3DSA:3.30.70.2605.7E-7254318No hitNo description
PROSITE profilePS5167111.251255335IPR002912ACT domain
CDDcd048732.67E-11256321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNASLPAPGD INLSHGVFGD FDYTFTDKEL EDVLGFMERQ QPHLASTLPT PETVNLRAQP  60
QPYDYGLLHV GGGGFDPGRM SPFLPSDSPG LGVKLELLDS PQQAPQPPGM PHPGAIHSTV  120
EKQRRDRINS LIDELRDLVP PQAGCGTGEA AEGSDSRRPK HVVLADTIQL VRDLQEKLVT  180
SEPRPRRQGT SSTSVSAAGA EHDSSALCPP GEFHRELSSN SQRSADSHPD LPQAPDDASP  240
MEEGVVVEAV DDTFYVKVHC KDRAGLLADI VRALKTMPLE ITSAAVTTTR HGMVCDVFQV  300
RLERGEAVSL SALRDAVMAV IFDSVAVGEK KRRADQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400265.10.0Transcription factor ABORTED MICROSPORES
TrEMBLA0A087SNJ40.0A0A087SNJ4_AUXPR; Transcription factor ABORTED MICROSPORES
STRINGA0A087SNJ40.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34551013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-10bHLH family protein