PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011400229.1

Organism

Auxenochlorella protothecoides

Taxonomic ID

3075

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella

Family

NF-YB

Protein Properties

Length: 496aa MW: 52063.3 Da PI: 6.0432

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011400229.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	40.5	6.4e-13	7	108	4	97
NF-YB 4 qdrflPianvsrimkkvlPana........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +d+++P a + r++k l + a +i kda qe + fi ++t+ a+d c+ +r+ti+++d+l al +l f + +l+ l+ + XP_011400229.1 7 TDAEIPKALLKRLIKAKLSTVAgadptrdyQIHKDALLAFQEAAKIFIHYLTATANDVCRDARRQTISAEDVLTALNDLDFGEVTGELTEALEDF 101 57889999999999988865432233333389*************************************************************** PP NF-YB 91 relegek 97 r +ek XP_011400229.1 102 RTEAREK 108 9877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.2E-29	6	121	IPR009072	Histone-fold
SuperFamily	SSF47113	7.11E-22	8	117	IPR009072	Histone-fold
Pfam	PF00808	6.6E-9	10	82	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PROSITE profile	PS51382	18.451	130	319	IPR004331	SPX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MTTPEVTDAE IPKALLKRLI KAKLSTVAGA DPTRDYQIHK DALLAFQEAA KIFIHYLTAT 60 ANDVCRDARR QTISAEDVLT ALNDLDFGEV TGELTEALED FRTEAREKSK KKAEGKKRKA 120 EATFLSSGGM KFAAALRNSA EELPDAAELF TLYKHLKKSL KRIPCGDAGH DDSSLVADPA 180 SEFGEAASGD EDEADTALEL PSLDASAATL ADSAQDAAAA LDEGERAFVA ELTRDVEQLN 240 EQYMEKEEVN VIRFGTLKDQ AAAARSRQEL QRAYRAVVDF HGELLLVLHW SILAYTGLVK 300 ILKKHHKRTG LLLRAPHLTN MLGQPFCSVE AEGPTSVADA EVHHGSSLSA DSHVCGSSAG 360 GLAAPGDGPG CHTEPRHKRR REPARMGEGA MSEGSAGGGA AGGEDAVTKP VPQGSGSTTA 420 TATATATTTG APSARPTAGS SVLRRTRAAL GLWRQLQVTA STPSTVLPPG AGLDARRALS 480 VGAAPAGSGL TNSSAA

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MTTPEVTDAE IPKALLKRLI KAKLSTVAGA DPTRDYQIHK DALLAFQEAA KIFIHYLTAT  60
ANDVCRDARR QTISAEDVLT ALNDLDFGEV TGELTEALED FRTEAREKSK KKAEGKKRKA  120
EATFLSSGGM KFAAALRNSA EELPDAAELF TLYKHLKKSL KRIPCGDAGH DDSSLVADPA  180
SEFGEAASGD EDEADTALEL PSLDASAATL ADSAQDAAAA LDEGERAFVA ELTRDVEQLN  240
EQYMEKEEVN VIRFGTLKDQ AAAARSRQEL QRAYRAVVDF HGELLLVLHW SILAYTGLVK  300
ILKKHHKRTG LLLRAPHLTN MLGQPFCSVE AEGPTSVADA EVHHGSSLSA DSHVCGSSAG  360
GLAAPGDGPG CHTEPRHKRR REPARMGEGA MSEGSAGGGA AGGEDAVTKP VPQGSGSTTA  420
TATATATTTG APSARPTAGS SVLRRTRAAL GLWRQLQVTA STPSTVLPPG AGLDARRALS  480
VGAAPAGSGL TNSSAA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011400229.1	0.0	SPX domain-containing protein 2
TrEMBL	A0A087SNF8	0.0	A0A087SNF8_AUXPR; SPX domain-containing protein 2
STRING	A0A087SNF8	0.0	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3453	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	9e-24	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Entrez Gene	23615923