PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011400084.1

Organism

Auxenochlorella protothecoides

Taxonomic ID

3075

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella

Family

GATA

Protein Properties

Length: 472aa MW: 49951.4 Da PI: 7.4755

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011400084.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	35.9	1.1e-11	237	265	7	35
GATA 7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35 ++TplWR++ + n CnaCG+yy+ +g+ XP_011400084.1 237 STTPLWRKDRQANMLMCNACGIYYKNHGR 265 68*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.6E-5	236	276	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.7E-10	237	265	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	13.956	237	288	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.3E-13	237	270	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	4.75E-9	237	273	No hit	No description
CDD	cd00202	1.35E-12	238	279	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MDEPDGLLSP RGSLWRSDVF ALLHADEAST DVRLGPQYQI EELPGPGAPD GPIPPSFWAE 60 ALATSDWHPL PTFSAADVAA FNLAMKLFDR DFRAVSKLVQ RSEAECVVFY YKVFKHSVVG 120 KRYRQLYRSG HTGDELLRGR KLVTAILPTL AAAGRLDAAG QSMLKHAADD YGRRALPLQV 180 FVPAVVALTG RDAFVRGVEA AGVAAEDPGD PGFLLSPRAV DSLVATSLPL KAVFWDSTTP 240 LWRKDRQANM LMCNACGIYY KNHGRHRPVE LVAAPARAAP GSNALSTRTQ PPVIAGIGAG 300 QHSPPQPTAS APPAVSPAAA PPARPPSRRR TAAAAALDSD ASDLESESRA WPGRHAPDSA 360 EESEGLAPSR PVAARVGGDE AARVSLIERL SASSQEPVSG ASPSPAASAS LFPGPHEELL 420 SALGHPPLRI ITHPKPIGGR YARDPVQPVA LSWPPSSLLL AGEGQGQHQP QH

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MDEPDGLLSP RGSLWRSDVF ALLHADEAST DVRLGPQYQI EELPGPGAPD GPIPPSFWAE  60
ALATSDWHPL PTFSAADVAA FNLAMKLFDR DFRAVSKLVQ RSEAECVVFY YKVFKHSVVG  120
KRYRQLYRSG HTGDELLRGR KLVTAILPTL AAAGRLDAAG QSMLKHAADD YGRRALPLQV  180
FVPAVVALTG RDAFVRGVEA AGVAAEDPGD PGFLLSPRAV DSLVATSLPL KAVFWDSTTP  240
LWRKDRQANM LMCNACGIYY KNHGRHRPVE LVAAPARAAP GSNALSTRTQ PPVIAGIGAG  300
QHSPPQPTAS APPAVSPAAA PPARPPSRRR TAAAAALDSD ASDLESESRA WPGRHAPDSA  360
EESEGLAPSR PVAARVGGDE AARVSLIERL SASSQEPVSG ASPSPAASAS LFPGPHEELL  420
SALGHPPLRI ITHPKPIGGR YARDPVQPVA LSWPPSSLLL AGEGQGQHQP QH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011400084.1	0.0	Siderophore biosynthesis regulatory protein URBS1
TrEMBL	A0A087SN13	0.0	A0A087SN13_AUXPR; Siderophore biosynthesis regulatory protein URBS1
STRING	A0A087SN13	0.0	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4830	8	10

Link Out ? help Back to Top
Entrez Gene	23612681