PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011400082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | SBP | ||||||||
Protein Properties | Length: 459aa MW: 48319.9 Da PI: 9.7479 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 27.7 | 7.1e-09 | 10 | 41 | 46 | 77 |
TSSEEETTT--SS--S-STTTT-------S-- CS SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C+rf el f+ r+Cr rL+kh +rrr+++ XP_011400082.1 10 CGRFQELAAFEGLMRTCRARLDKHAARRRRAN 41 *****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 10.708 | 1 | 40 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-5 | 9 | 41 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-7 | 10 | 39 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MATAQAEKPC GRFQELAAFE GLMRTCRARL DKHAARRRRA NQLPHANPDP DYRLPKSQRI 60 TYSALTAPSS GGSPDRRPPL SAEGAVRDEG DAVEVRMATA AAREASDTIP PLVISRPLHI 120 QLTTAGQEAP AEVPDPAPFQ PWQSARQEVP KDELYLSAIS RLAQMAAGHG STHAKEVAAA 180 ELAAHGVEAS EGHGSHPTAV PYLDSQALHR PLSSLDQLVR RLRRERSWGA AREGSTPSGT 240 SQHLAAGEIG GRGPHRSWPF PSYHQQPPQQ QQRVGSGPGS EPQPVRGFQR ILSMQGSSDP 300 ARNPMPSPFK NPEVQVGTLG RGADSRPGPA RRSSDGSPHA PTSLRSRVGA ALGESLSALE 360 GWLSVLAVLG PEDSAAVLST LPRGLVGRVS ALLSSLAPQG TLREENQPHG VHADDAGPGP 420 QHEAGAAKAP RMASQPSLRA SETSAFAPLA PLGGSPPHG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 225 | RLRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011400082.1 | 0.0 | hypothetical protein F751_1288 | ||||
TrEMBL | A0A087SN11 | 0.0 | A0A087SN11_AUXPR; Uncharacterized protein | ||||
STRING | A0A087SN11 | 0.0 | (Auxenochlorella protothecoides) |
Link Out ? help Back to Top | |
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Entrez Gene | 23612679 |