PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400012.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family Nin-like
Protein Properties Length: 421aa    MW: 45138.6 Da    PI: 10.251
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400012.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK43.75.5e-141822201048
          RWP-RK  10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 
                     l ky +lp  +A+ eLg++lT++Kr  R+yGI+RWP+Rk
  XP_011400012.1 182 LGKYGDLPALQACAELGIGLTMVKRLSRKYGIMRWPYRK 220
                     678999999*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.525.103.6E-303183IPR001251CRAL-TRIO lipid binding domain
SuperFamilySSF469383.27E-6760IPR011074CRAL/TRIO, N-terminal domain
PROSITE profilePS5019111.94760182IPR001251CRAL-TRIO lipid binding domain
SuperFamilySSF520871.09E-2563184IPR001251CRAL-TRIO lipid binding domain
SMARTSM005168.1E-766202IPR001251CRAL-TRIO lipid binding domain
PfamPF006502.7E-2067184IPR001251CRAL-TRIO lipid binding domain
CDDcd001704.67E-1970182No hitNo description
PROSITE profilePS5151911.103161245IPR003035RWP-RK domain
PfamPF020421.4E-11184221IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEALHQLERR LDQGRCRGRY TRDTAVWFLR DRRLDVAEAA GKLEAMLDWR ARIGADGLDW  60
ASVAKEAASG KVYLHPHRDV LGRPVVVIHV RKHVMGASPG ADSQRLCAWI LDAALAALPP  120
GQECVLGIFD LKGFSLQNAD LGFARFLVDA LFTYYPRRLG QAVLVDPPWA FQPGWSVVKP  180
WLGKYGDLPA LQACAELGIG LTMVKRLSRK YGIMRWPYRK NRAERRVAGW DEQHDMANSS  240
DLDVTVGLSG VSLPSLEAMP SSTPGSGAVP APVAQEPRAQ GELVDRRWAS SDSSHVNYHA  300
VAAAARSPTA PAPSALGFGA VVAEALARAQ RGARPVAPLM TQLVDALAAN QAGQGSAGRS  360
PSHQAPPTGP AQLLRIRTGV TPASPFLPDT GTCPLSLGAS QPRPRPAPFG SRRSAFSALS  420
L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400012.10.0CRAL-TRIO domain-containing protein C3H8.02
TrEMBLA0A087SMV20.0A0A087SMV2_AUXPR; CRAL-TRIO domain-containing protein C3H8.02
STRINGA0A087SMV20.0(Auxenochlorella protothecoides)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.19e-07RWP-RK domain-containing protein