PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399775.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family GATA
Protein Properties Length: 408aa    MW: 43258.6 Da    PI: 10.2086
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399775.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA245.5e-082692921235
            GATA  12 WRrgpdgnktLCnaCGlyyrkkgl 35 
                     WR+gp  ++ LCnaCG ++ ++g+
  XP_011399775.1 269 WRKGPPSHPILCNACGTRWLRNGT 292
                     *****99999*********88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002021.92E-6269306No hitNo description
PROSITE profilePS501148.682269308IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-6269296IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MYVAEHVFAE PLKAHCPHLE IPSRDVSSLA TTQSEGGTSP SVSSPASFAQ HHDKVGWGSG  60
QGCLGSLRLS AWIWWMWPAR HAPLCTGLKA CHPHSVHPCT LFHHSGIFGH AGGRVGGHAD  120
SLLGQRRDSC PCARVSPGVM EPRQPGAHEA LMRAHPPHDR TSPPPDMVAC CRHLPFLQCL  180
HRDQSVHGSP MRLGHVDCPC LPPLPPHLTS RGFFGESRRT SPTTTPAKRA PPALFKGPPP  240
ASSTLVPAWR PLDTPQIPPQ NGLHLLLRWR KGPPSHPILC NACGTRWLRN GTLKPLVPRR  300
GLRYKAVRSG SSKGLGASAS QQDLSQPAGS SAARLGGETE PAPQPRPESF SHSATGTPAP  360
PTPATGSPPL ALPLLPLGLP ASLLATLCKR GDAPPPARAV SLQHAALA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399775.10.0hypothetical protein F751_0759
TrEMBLA0A087SM730.0A0A087SM73_AUXPR; Uncharacterized protein
STRINGA0A087SM730.0(Auxenochlorella protothecoides)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.23e-07GATA transcription factor 26