PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399674.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB
Protein Properties Length: 580aa    MW: 60806.4 Da    PI: 7.9709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399674.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-162571148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+l++++v  +G ++W+++a +++ gR +kqc++rw+++l
   XP_011399674.1 25 KGPWTKQEDQLILRLVDHYGAKQWTLVAGHLQ-GRLGKQCRERWHNHL 71
                     79******************************.*************97 PP
2Myb_DNA-binding46.87e-1578121247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+WT eEde  v+ ++ +G+  W++ a+ ++ gRt++ +k++w++ 
   XP_011399674.1  78 GNWTREEDEVVVRFHACHGNQ-WAKLAQFVP-GRTDNALKNHWNST 121
                      89*****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.25119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-12335IPR009057Homeodomain-like
PROSITE profilePS5129429.1532075IPR017930Myb domain
SuperFamilySSF466891.54E-2823118IPR009057Homeodomain-like
SMARTSM007171.8E-152473IPR001005SANT/Myb domain
CDDcd001671.87E-132771No hitNo description
PfamPF139214.7E-172886No hitNo description
Gene3DG3DSA:1.10.10.603.9E-253679IPR009057Homeodomain-like
PROSITE profilePS5129421.58976126IPR017930Myb domain
SMARTSM007171.7E-1376124IPR001005SANT/Myb domain
CDDcd001671.65E-1079122No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2180126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MLLPNRTEAQ CFHRWQKVLN PEVCKGPWTK QEDQLILRLV DHYGAKQWTL VAGHLQGRLG  60
KQCRERWHNH LNPAIKHGNW TREEDEVVVR FHACHGNQWA KLAQFVPGRT DNALKNHWNS  120
TLRRKVEQGE FLGLRPWVDR PGDSQDEDGC SPASDQPPNA TAGGSEPQPA QAPALPALPD  180
PNLDPPIILL GPRRSGRRSS LVVDQTFFSP PSQPQVDAWV AAPTGDLRLP SDFVPDLDEP  240
DSAAAGQCAP APSVEERKPS FSFRTLPRRA SVGGTGPRPV AKPSARHKAR GKVEAAASDE  300
ATRAPQASGA GSRSRRRRRE SADAGPNQDA TQLSGDATRG ATGMMIEGPL PPVAHAAYGG  360
PKAAAAAPGA AASLAPTVTG PPGCQTLPLA LGVVLLPVGG GGCSGPPTQQ PACPAPALAQ  420
GPAALLSLKA RLYQLAAVSP EQACRDARGA EGDAGAWGAP EEGFEAPRPA AVLHLARRLE  480
GSSWPGADGE RLGDMQRRPP CPDAASGGPA PLALDPSLPS SVLRAAGLAA ALGQGLPCTG  540
PTCQADALSC MRAALWTGEE LFAAARDLDG GRFAASLLNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-60312636159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-60312636159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399674.10.0Transcriptional activator Myb
TrEMBLA0A087SLX90.0A0A087SLX9_AUXPR; Transcriptional activator Myb
STRINGA0A087SLX90.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-53myb domain protein 3r-5