PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399537.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 395aa    MW: 41182.2 Da    PI: 4.7216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399537.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07195221127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C ++++   C++G++CkF+H++
  XP_011399537.1 195 PGEPTCAYYSKHWRCSFGNTCKFHHPE 221
                     57899******77************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.737194222IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5196221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5198222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAGTRPPSLR AVILRSGQGV EEVIGGERQG LGALEELMHV SEGEIEIHVF KAPQLQDLPE  60
YLAAKKPNML YISGHPQPAA VELFLRALTG LNLFAVYIDA AGCEDLGEGL WGGGPGVHWA  120
LGHPDPAGAR SLDAALWTVC PEGAGPQPPT PCASLPHTSS PPSPPSLPRL SCKFSHPLEL  180
LPELRYNSLN LPLRPGEPTC AYYSKHWRCS FGNTCKFHHP EPPQGLGGHA PASTTSADGM  240
RVEPRDAQVR HMPPSPFDRA ASGLLGPLRR APLSVHVASV AVAAPRTPEP QTPDSRSPGA  300
DAGVPQDVPP GPGASLPLMV FCGSASGVGP RSQASMAGVG SSFFASGLQG LGEAEEPEDV  360
EGPEDVEGPL EDAEGPEDVE GPGNAGDRGR NPDQD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399537.10.0Zinc finger CCCH domain-containing protein 63
TrEMBLA0A087SLJ50.0A0A087SLJ5_AUXPR; Zinc finger CCCH domain-containing protein 63
STRINGA0A087SLJ50.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP623277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.15e-10C3H family protein