PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011399536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | C3H | ||||||||
Protein Properties | Length: 96aa MW: 10364.4 Da PI: 6.5006 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.9e-07 | 80 | 96 | 4 | 20 |
---SGGGGTS--TTTTT CS zf-CCCH 4 elCrffartGtCkyGdr 20 +C ff+rtGtC yG+r XP_011399536.1 80 QPCVFFLRTGTCAYGAR 96 69*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.817 | 76 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MNVPGSPSPF MGSGSMAYSL APSASPHSVL SLPHRPMGSY PTWSESEWGP SRDPSQAQAQ 60 HSISSRLSHE EDPKEEGQQQ PCVFFLRTGT CAYGAR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011399536.1 | 1e-64 | hypothetical protein F751_2185 | ||||
TrEMBL | A0A087SLJ4 | 2e-63 | A0A087SLJ4_AUXPR; Uncharacterized protein | ||||
TrEMBL | A0A1D1ZSL7 | 7e-59 | A0A1D1ZSL7_AUXPR; Uncharacterized protein | ||||
TrEMBL | A0A3M7L260 | 5e-60 | A0A3M7L260_AUXPR; Uncharacterized protein | ||||
STRING | A0A087SLJ4 | 4e-64 | (Auxenochlorella protothecoides) |
Link Out ? help Back to Top | |
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Entrez Gene | 23613576 |