PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399412.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 912aa    MW: 96060.8 Da    PI: 8.7523
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399412.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-162569147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT eE++++vd+v+++G   W +I  ++g ++++ q++s+ qk+
   XP_011399412.1 25 RERWTDEEHDRFVDGVRLYGRQ-WQKIQGHVG-TKSAIQIRSHAQKF 69
                     78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-141974IPR009057Homeodomain-like
PROSITE profilePS5129419.4642074IPR017930Myb domain
SMARTSM007174.1E-122472IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.0E-142472IPR006447Myb domain, plants
PfamPF002491.6E-122568IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-82565IPR009057Homeodomain-like
CDDcd001671.13E-82770No hitNo description
Gene3DG3DSA:3.30.750.442.0E-13523605No hitNo description
SuperFamilySSF520961.54E-45525619IPR029045ClpP/crotonase-like domain
PROSITE profilePS501069.23592662IPR001478PDZ domain
SuperFamilySSF501564.39E-10595689IPR001478PDZ domain
SMARTSM002280.0021601692IPR001478PDZ domain
Gene3DG3DSA:2.30.42.104.1E-10606689IPR001478PDZ domain
CDDcd001361.78E-7631688No hitNo description
SMARTSM002451.0E-40698890IPR005151Tail specific protease
SuperFamilySSF520961.54E-45719888IPR029045ClpP/crotonase-like domain
PfamPF035726.5E-38727886IPR005151Tail specific protease
Gene3DG3DSA:3.90.226.108.9E-40727895IPR029045ClpP/crotonase-like domain
CDDcd075601.47E-39756885No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0009543Cellular Componentchloroplast thylakoid lumen
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008236Molecular Functionserine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MTSEPSLPGS YPIKARKAYT ITRPRERWTD EEHDRFVDGV RLYGRQWQKI QGHVGTKSAI  60
QIRSHAQKFF AKVAKRGGDS LSSSCSQDWL PEDFKVPPAK TRRRGSDSSM QDVEDHAGDG  120
AHSVLLALTN SEARKSAQSA APPQMTLSTV VAAASAAATE AILSVLARAA PGVEAQLEAN  180
PCQNYPFCGL APSTIRLLGR TAALQASLDD EQGRVRDALP VVPGIPGHQL PHRRWVLGGR  240
HAHRAGRQAR HEVSVPHPPR TLAIPCSGAA WEQDLYRLLA ASIGGLVEAS APGLRGHNSG  300
AVPVSAFSKA QRPLPGMALG QEVAAGSEDA DSHPGSSSDD VVVLDGRGEV PRRYRSGRGD  360
SADRVSPLPA KPSTQGPWSQ GRRMLRELGA DAARGKVRPE QAETAPLDSA APTGLGARSW  420
DDARHSSGLS AIAAACQQLS HSMHSQEITS SGQSRGGQAL PPPTQLHTPL PRPLPAWGRC  480
GVSGSLLEDR LVESAQGLEA AVGGVTSRFR ASLVTKNARE AQAAQTFLDE VWEVVGTNFE  540
DVRSRGFRRE DWQAQRAAHA GIADLEEAHS VVRAALAQLH DPYSRLISRS AFAGMLKYDV  600
SGVGLNLVTG EEYLERTNAA RLEDGRRPSA GVWVLGVIQG SLAEQAGVRL GDELLEVAGH  660
SVCASPPFKV ASLLQGGSAD GADLALKVAQ ARRLDGSVYD VSLPGKRAGP SSSPVSLELP  720
RAPSGDAVVK LRRFDARAAA DVAGALARAE AGGTGRVILD LRSNRGGLVT EGVEVASLFL  780
AEGDVVLRSQ GRGAGARPPY IARSPPATSL PLVLLVDGQT ASAAEAAAGA LRGNCRAVVA  840
GRQTFGKGLI QSVYELSDGS GLVLTVGKYF TPAGVDIDRE GIQPDFRSVP DQQQAEEVLR  900
ACRLERAPAA SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1fc6_A2e-365258916365PHOTOSYSTEM II D1 PROTEASE
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399412.10.0Carboxyl-terminal-processing protease
TrEMBLA0A087SL760.0A0A087SL76_AUXPR; Carboxyl-terminal-processing protease
STRINGA0A087SL760.0(Auxenochlorella protothecoides)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-26MYB_related family protein