PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011399206.1

Organism

Auxenochlorella protothecoides

Taxonomic ID

3075

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella

Family

MYB

Protein Properties

Length: 432aa MW: 46850 Da PI: 11.2984

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011399206.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2e-09	27	58	12	45
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 l d+ + +G++ W+ +ar++g ++t+ qc rw+ XP_011399206.1 27 LRDVQEVHGNR-WSEVARHIG-TKTGQQCAQRWR 58 5688899**.*****.*********8 PP
2	Myb_DNA-binding	48.8	1.6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+ Ed +l +v+q+G+ W+ I+r ++ gRt+ qc rw+ +l XP_011399206.1 67 KEKWTEAEDNQLTSLVRQYGSC-WAEISRNLP-GRTDQQCMGRWRRHL 112 679*****************.*****.**********986 PP
3	Myb_DNA-binding	44.6	3.4e-14	118	162	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W + Ede+l ++v+++G W+ I+r m gRt+ q++ rw ++ XP_011399206.1 118 RVSWHPTEDEKLRELVAEHGAS-WSFISRFME-GRTAQQVRARWCQL 162 679***************99.*****.*********875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.065	15	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-13	27	68	IPR009057	Homeodomain-like
CDD	cd00167	1.12E-6	27	58	No hit	No description
PROSITE profile	PS50090	6.853	27	61	IPR017877	Myb-like domain
Pfam	PF00249	1.1E-7	27	58	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.88E-24	41	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.328	62	116	IPR017930	Myb domain
SMART	SM00717	3.4E-16	66	114	IPR001005	SANT/Myb domain
CDD	cd00167	1.57E-13	69	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-19	69	113	IPR009057	Homeodomain-like
Pfam	PF13921	1.4E-15	70	128	No hit	No description
SuperFamily	SSF46689	2.17E-19	99	164	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-16	114	162	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-12	117	165	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.699	117	167	IPR017930	Myb domain
CDD	cd00167	7.98E-11	120	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MRVLSRRCAR PGALAPSSLV ANTLRGLRDV QEVHGNRWSE VARHIGTKTG QQCAQRWRHR 60 VNPNISKEKW TEAEDNQLTS LVRQYGSCWA EISRNLPGRT DQQCMGRWRR HLDPSVRRVS 120 WHPTEDEKLR ELVAEHGASW SFISRFMEGR TAQQVRARWC QLESLESTPA SLRVKARQGG 180 HANRPSAPAK VSSSGDASLK KHLTFDAAQA SAAAQLMASL AWGGAAALRP PHPGPAARQA 240 LRLDLEHSNP PFFARLAALA PSLEGSRVTP IKLSTALGGG PSLLSPPMGP LLSPLGCSRD 300 GQLESPQFHG LVTPEWARQG QRGPGSTGEG RHRDADFDTR RAAVTRRLPM DELAPDPASP 360 RAADLQGFGS FSMVLGSPPK KARMATPVRG GAPAPVADAA HLLQPESWAG SATADMNSRS 420 VRTSLHALLE QV

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MRVLSRRCAR PGALAPSSLV ANTLRGLRDV QEVHGNRWSE VARHIGTKTG QQCAQRWRHR  60
VNPNISKEKW TEAEDNQLTS LVRQYGSCWA EISRNLPGRT DQQCMGRWRR HLDPSVRRVS  120
WHPTEDEKLR ELVAEHGASW SFISRFMEGR TAQQVRARWC QLESLESTPA SLRVKARQGG  180
HANRPSAPAK VSSSGDASLK KHLTFDAAQA SAAAQLMASL AWGGAAALRP PHPGPAARQA  240
LRLDLEHSNP PFFARLAALA PSLEGSRVTP IKLSTALGGG PSLLSPPMGP LLSPLGCSRD  300
GQLESPQFHG LVTPEWARQG QRGPGSTGEG RHRDADFDTR RAAVTRRLPM DELAPDPASP  360
RAADLQGFGS FSMVLGSPPK KARMATPVRG GAPAPVADAA HLLQPESWAG SATADMNSRS  420
VRTSLHALLE QV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	1e-20	12	159	2	151	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-20	12	159	2	151	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011399206.1	0.0	Myb-like protein A
TrEMBL	A0A087SKQ6	0.0	A0A087SKQ6_AUXPR; Myb-like protein A
STRING	A0A087SKQ6	0.0	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	3e-26	myb domain protein 3r-5

Link Out ? help Back to Top
Entrez Gene	23616194